RnoINT0030558 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23002908-23004182:-
Coord C1 exon
chr8:23004030-23004182
Coord A exon
chr8:23003069-23004029
Coord C2 exon
chr8:23002908-23003068
Length
961 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CAGGGATATGTGGTCCGCAGGCG
3' ss Score
4.8
Exon sequences
Seq C1 exon
ACCCACCGAGACCACGTACTCCTGCAGTCAGAAGATACAATACAGGACCACCAACGCCACAAGGAGCAGGAGCTGCGGCAGCGCTGGAGCATGTACCAGATGGAAGTGATGTTTGGCAAGGTCAAAGATGCCACTGGAGTAGCTGAGTCGCAT
Seq A exon
GTGAGTACCCTGGGCTCACACCAGGCAAGCAAATGCTCCTTTTTGCTTCAAGGTGTCCTCTCCTGTCTCCTCTATCTCCAGCAGAGCTGTCCACCTTAGCCCTACTTCCTTCCACTCTTCCCCTGAGCTGACTTCTTTGGTACGTCGGTTCTGGGAGTTTTATTTGTCAGGTTCCGTTTCTCAGACCATCACAGTGTGGAATGGTCTAGGATTCAGTGATCTGTCCAGATCATGCCTATGGTGGAACCAGGGCCTTGTTCTGGGCCTACTCTTGGTAATAGTGGCGATGCCTTCCAAGACCTCGTGTATCTCTGCTGCATGATCCTGCTTTAGAACAGCACCCCCCTCTTCTCCCTGTCCCCCGCCAGTCACTTTCTCCAGATTAGGTTCTCTGCTACTCCTCAAAGGGGGTTCATTCCCAGGAGATCAGGGACTCTGACCTGTGAGATCATCTGTGGACCCATTTGCCAGTCCAAGGCCCCTTTGCAGACATGCCAGTCCAAGGCCCCTTTGCAGACATGGGTCTAGAGCTGGTGAGATGGCCTAATGGATAAACATGATTGCCCCCAAGCCTGACAACCTGAGTTCCAGCCCTGGGCCCCAAGCTGGAAAGTGAGAGCTTCCTGAAGTCCACACGTGCACCTTGGCACATGCCTGCGCAAACGGCTGGGAGGGCTGATCGGCCCCAGAGACACAATGTCTTTGTCCTATTGGGTGAGCTACCCCATCTGAGTTTGCTGGCACGGTAACTTTTGGATGGAGAGTGCTCACTGCTCTGCTGCATCCCGCATTCTGATTTTAGCTGACTCAAATATAGGCAGGAAGGGGCATGGGGGAAGTACAGCCTTGGAGCAGTTGGGAGACTGGCCCACACTGTTCTCACATGTTGTGTGACACAGACGACCGTAGTGTTCTGGAGCCTCCCTGTTCCAAGCTCTGACCAGGGATATGTGGTCCGCAG
Seq C2 exon
GCGGTGGTGCGAAGATTCCTGGCCCAGGACGAGACCTTTACGCAGCTGGAGACCCTCAAGAGAGACAATGAACTGGCGTTGGCAAAGTTGAAGGAGGAGAAGCAGCGGCTCCAGAGGGAGCTGGAGAACCTCAAGTACTCAGGGGATGCCACACTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGACCACGTACTCCTG
R:
CTCACCAGTGTGGCATCCC
Band lengths:
310-1271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]