HsaINT0031165 @ hg38
Intron Retention
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207761249-207767195:+
Coord C1 exon
chr1:207761249-207761446
Coord A exon
chr1:207761447-207767012
Coord C2 exon
chr1:207767013-207767195
Length
5566 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
AGGTTTCTCTAATTTTCCAGTGG
3' ss Score
6.59
Exon sequences
Seq C1 exon
AGGTTTTGTGTACACCACCTCCAAAAATAAAAAATGGAAAACACACCTTTAGTGAAGTAGAAGTATTTGAGTATCTTGATGCAGTAACTTATAGTTGTGATCCTGCACCTGGACCAGATCCATTTTCACTTATTGGAGAGAGCACGATTTATTGTGGTGACAATTCAGTGTGGAGTCGTGCTGCTCCAGAGTGTAAAG
Seq A exon
GTAGTGTTTCAATTTATTTCCTTCTTCATTTGTAAATACTATGGAAACATTTTGTAAATAGTTTCATCTACAGATAAACAAAGCAGGTGTATGTGCTTCCTCCTCCTGTATAATTGGTTTCTAATTTATTTTAATTCAGGTCAATTCAAGTCAAAAAATAGTTCTAGCTAGAGTTCCCTATTTCTCACCCCTACATGTTCTTGGCATTTCATTTTATACAGTGTGAACTACTGTGTACCTGCATGAGTTAGAAGTTTTTGTTTGAAAGAACCAAAAAAAAAAAATACACACTGGCTTAAAGAAAGTTTCATCTTGTATTACAAGAAATCTAAGAGTTCTGGCTATGGTAGTGGTAAACTGTGACAGACTAATCGTCTCACAAATAAAAATGATAAACTCTGGATAAAAAAAATTTTTTTTTTAAAGACCAAATGTTTAAGGCACTCTGGAGTGACCAAAAGTATGAAGACCATGTAGGGGACTTGCCCATTTAAAGAAAGAAATCACTGAATAACAGTGATTTAAAAGTATATACTCCCCAAGTACACATGAAACATTCTCCAAAGTAGACCATATTCTAGACAATAAGACAACTTTTAACAAACTTCAGAAAATTGAAATCATTCAACATGCATTATCACAATAGAATGAAAGCAGAAATCAATAACAAAGCCAATCCCCAAAGAATTGGAAAGTGTACAGGACACTTCTAAATAACCCATGCATAAAAGAAGTAGTCAGCAGGGAGATTAGAAAGTGTTTTGAATTGAATAAAAACACAACATCTCAAAATATCCAAATATGTAGGATGCAGCTAAAGCATTGCTTACAGGGGAATGTATAGCATAATATACTTGTGTTAGAAAAAAAGAAAAGTCTCAAATCAATGATCTAATTTTCCACCTTAAGAAACTAAAAAAGAGCAAGTTAAATCCCAAACTAGCAGATGTAAGGAAATGATAAAAATAGAGCCAAAATCAATGAAATTGAGAAAAGAAAAAAAAATAGAGGAAATCAGTGAAACCAACAGTTGCTACTTGGAGATCAATAAAGTGTGTAAACCTGTAGCCAGACTGACAAAAAAAGACGCAAATTAACCAATACTGAGAATGAAAGAAGTGGTGGCCAGGCGCGGCACCCCAGCCAGCTTGAAGACCCTGCCCTCCTGCAGCCGGCAGGGGCAGTCACTCCCGGACTTGTCCTTTTAGAAGTTCCAGCTTTACCACTTGCTGGTGGAGCCCAACCACTGCCGCAGGGTCCTCATCGCCAACACGCCTGGCAGATCCAAGAGGAGATGGCCCAGGATGAGACGTGGCACACACAGGCACCCGAGAGTGTGGGGTTGGCGTTGTTCCACTGCCTGGTTTCTGCAGAGATCCTGTGCCTGTGGCCTGTGCCCGCCATGTGGAAGCCAGAGGGGGTGTGCCATGCCCCCCGCTTTGGACACTGCTGCGTGAAGGGGCCAGTTTTCAGACCTTTGCTCTGTCACCTCAGCACTGGCGCCAGGAGCCCTGAAGAGCAGCATCTGGGAGACGGACAGCCCTGGGGAAAATAGAGGAGGCGTTCAGAAGTAGCTAGATGAGATATTTGAAATACTGAAGACCAAAAACCCCAGTTTGCATGGAAGAACTGGCCTCAGATGTGGTCAGTTCCTATGATGACCTGGACACACGGTGCTGACCCACACGATGGGAGGTGGCCCTGCAAAGCATTCAGAGGCTTGGGCCTGCTGCCGTCCGGCCTCCCACCTCCAGCTGCAATTGCATTCTGACCTGGGCAAGTAGGAACACGTAGTGGAGATCCTGATGGAGACCTGAGCCAGGCGTCCCGGAGTGCTGGCCAGGCGTGGAGTACGGGATCCAGCTAAGGGAGACTGGCCAGCCTATAGCCCCCCAGCCTTGCTGGCTCCTCTGCTAATTCCAGCAGGGTCTGCAGCCCCAGACCCATCCCCTTCCTTCCCGTCTGCAGAGGGCAGGCCAGAGGCTGGTCTCAGTGGGAGCTAGGGCTCTCCTCAAGGGCTTTTTGACCTTGGGCCAGTCTTGACATCCCCACAGCCCTGCGCCCCTCATCACTTTTCGTGTCTCTCGGAGACGGCGAGCTGCAACTGCAGCAATCTTGTTTAAATTTAGGTAGGTGAATTTCTTAGAATTAAGTTTCATATGTTTTGAGCAATAAGTTTTCTTAAGATATATATATTTTAATCTTTTTAGTTTTATCTCTGAATATTTTTTATTTTTTTTCAATGTATTTTTTTTCTGGAAACATTCTGTGCTGCTACATTAGAGCCTACACAGTTTAGTTGGTACATTTCATTCTTTTAAGGTTCAAATAAGGGATTTTATTTTCCAGTGAGTTTCCTTGCATTGTTAACAAGTCAACAGCGTTAACGTATGATTTTTTGGTTTTTTTTTTTTGTATACTTTAAATTTGTGTGCAACCCTTCTCATTTATGCCCTGTGTTACAGTGAGAGCTTGGTCAAAGTGGGGAAAACACACACAGCTGCTACACTTTTTTTTTTTTTTTTTGTCATTGGAACATTTGTGCCATGTCTTCCTAGACTTAAGTGTAAATTATGGAGGGTTTTATTTGACAATTTATATGTAAATGTCATTGAAGGCTAAGGTTAAATCTTTGGAAATCACAGGCACCAGTTGATCTTTAGAGACCTCAGATCCCCTCAGGTGGCGCCTTGTGATAGGCGGTGTTCTGGGAGGCTTCCTGTCAGGTTCCACAGCACAGGCACCTGCTCTGGGCACGGACTGAGCTCCTGGGGTGTGCACGGAGCTGCGGTGCGCCAGTCACATGCGCTTGGAAACAGCGTGTGCTGCTGGATTGGAAATGCCTACGTTGCTCTGTTAAATTGGTGCTGGAGCCAAAACCTAAGGTTAAATTTAAGTCTAGAATGAAAGAAATCTGAATCCATGTAATTAATGGCCGCTCGATCTTGAGAGTCCTTGACGGCCCTGCCTCAGGAAGTGAGGTGGGGGTGCCTACACCTTTCACTTTCCTTCCTCACGTCCACCCCGTATGTGTTTCTCATCCTTTTTCTGACTTCCCCCCATCCCTTAGCCAAAAAGCTTTATATTCTTTTGTGCATATGGTCATTCTTTAATATCAGTGATGTAAACTTTACTTGATTACTTTACAAAATTATTCAACAGACAAACAAAAGAATGAAAAAGAGAATATCACTAAATATCCTACAGACATTTAAAGGATGACAAGGGAATATTATAAACAACTTTATGCCTACAAATTTGACAACTGAAATGGACAGATTCCTTGAAAGATACAAAATGTCAAAACTCACTTGAAGATATGGATAACCTGAATACTCCTATATCTACCAAAGAAATAAAATTTGTAGTTAATAACCTACTGAAGGTCCAGATGGCTTCACTGGGGAGTTCTACCAACCATCTAAGGAATAAATCACAGCAATTCTACACAAGCGTTTCAAGAAAGTGCAAGAGGAGGGAACACTTCTCATCCCATTTTATGATGATAGCATTGTCCTTATACGAAAACCAGAAAACAAAAACATTATAAGAAAATTACAAATAATATCCTTGATGAACACAGGACCAAAAATCTTCAACAAAATATTAGCAAACCAAATCCTGTGATACATAAAAAGAAAAGTAAATCATGACCAAGTAGGATTTACCCTATGAATGCAAGATTAGTTCAAATGCAAAAATTAATCAGTGTAATTTGCCACATCAGTAGACTATTAAGGAGAAAAAAAATCATGTGGTTATCTTATTAGATGCAAAAAACAAAGAAAATGTTTGACAGAATTCATCATCTTATTTTTTCATGATAAAACTTCTCAGCAAACTAGGAACAGAAGGGTACTATCTATCTTACCCTGATAACAGACATCTACAAAAATCTCACAGCTAACATTACACTTCATGGTTCAAAAAAATTATACTTAGTGGTAAAAAGTAACATTGTACTTAGTGGTTAAAAAAACCTTACTTACATTTCTGTCTAATTAATAAAGACCTAATTCTGGAAGGAAAACAGTGAGGATGTCCACTCTTACCACTCCATTCAGCATTATATTGGAGATCCCACCCAGTACAGTAAGGCAAGAGAAAGCTATTAGGCACACATGTTGGAAAAGAAGAAATAAAAACTGTCTCTACTCACAATGAGATGCCACTAAATACCTATTGGAAAGGCCGAAATGTAAACACACACACCCCAAACTGACAATACCAGGTATTGACAAGGATATGGAGCAGATGAAACTCTCATATACTGATGGTGAGAATCAAAGTGCAATGACCACTTTGGGACATTTTTGGCATTTCTTATAAAGTTAAACATACTCTTATCATACAACTCGGCAACCCAAATAAACTGAAAACATTTTCACACAGAAACTTATATGAGGATGTTCACAGCAGCCTTATTCATAATCACCCCAAACTGCAAATCGCCACATGTTCTTGAGTTGGTGAATGAATGAACCACCTGTGCTACCTCTAAAAGATGGACTCGTACTCAGCAATAAAAAGGAATGAACTGATTCATGCAGCAACACAAATGAATTTTGAAAGCATCATGCTTAGTGAAATAAGCCATACTAAGAAGACTGTAATTTCATTTATGTGACATTCTGAAAAAGTCCCACTATAGGGATAAAAGCAGATCAATGGTTAGCTGGTTGTGGAAGTGGGGATGAGGGGGAAGAGGGGTAACTCACAAAAGAGCATGAGGAAATTCTGGAGAGTAATGGAACTTTTCTGTATCTTTACTATGGTGGTAGTTACATGATTATTTGCATTTGTCAAAACTGATACAGCTGTACACTTGAAATGGTGAATTTTACTGTATGTAAATTATATCCAATAAACCAACCTTTACAAATAACATTAGGTACAATTAGACACAACAAAAGGTCAGTGAACCTGAAGACAGGTGAATAGAAATTGAACCTTATTTAAGAAGAAATGTTGACTAAAGAAAGAGAGAGGCTTACAGACCTGTGGGAGAGTATCAAGCAGTGAAACATACATGTAATTGGAGTTTCAGAAAGACAGGAGAGAGAATGGTGTAAAATATTATTTGAAAAAATATTGGCCAAAAATTATCCAAATTAGATCCAAAACAACCTCAGATCCAGGAGATTCAGTGAACCTTCAGCAGGATGAATAAATTATTAAAATTTACCACCACCACCACCCCCCTGCAGTAGTTTGGTAAAAACTACCAAACAAAATTTTAAAAAGCAGCCAGTGAGTGGGGAAAACAACAAAAACCCGTATTACATTTAGGAGGGCAGGGACAAGTAAGAATGACAGCCAGCCAAGTTTTCTTAAGAAAATGTGGTTACAATATGGTTATCTCTGTTAGTGCTGAAAGAAAAATAAAACACCCTAGAATTCTGTATGAAGGAGAATATATTAGTTAACATTTAAAGTCTTTTAAAAAATGTTTTTAACATCTTGCATTCCATTCCTTGTCTCTGTTCACACTGGAAATTACTACTTTGTACTACTTTTTCTGCTAAAGCAGATATCCATTAATTCTGAGGTTTCTCTAATTTTCCAG
Seq C2 exon
TGGTCAAATGTCGATTTCCAGTAGTCGAAAATGGAAAACAGATATCAGGATTTGGAAAAAAATTTTACTACAAAGCAACAGTTATGTTTGAATGCGATAAGGGTTTTTACCTCGATGGCAGCGACACAATTGTCTGTGACAGTAACAGTACTTGGGATCCCCCAGTTCCAAAGTGTCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335:ENST00000358170:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development