RnoINT0032220 @ rn6
Intron Retention
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113805774-113810614:-
Coord C1 exon
chr13:113810417-113810614
Coord A exon
chr13:113805957-113810416
Coord C2 exon
chr13:113805774-113805956
Length
4460 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGCGGTTTTCCTCTTTTCAGTGG
3' ss Score
9.41
Exon sequences
Seq C1 exon
AAGTCTATTGTTTACCACCTCCAAAAATAAAAAATGGAACACACACCTTTACTGATATAAAAGTATTCAAATACCATGAAGCAGTAATTTACAGTTGTGATCCTAACCCAGGGCCAGATAAGTTTTCCCTTGTTGGACCGAGCATGCTATTCTGTGCTGGCCATAACACCTGGAGTAGCGACCCTCCGGAGTGTAAAG
Seq A exon
GTAAATCATCTTTTCTTCATTTGTAAATAGTTTTACCTAAAAGTAAACATAGCCAGCATATGCACTTCCTCCTCTTATGAACTATGTTCTAATTTAATTTTATAGCTTTTAAGTTAAATAAAAAAATAATTCTAGTTACGCTGTTCTCATTTTGTGGTGTGTGAGCTACTACCCATAGCCATGAGGTAGGATATTTTTTTGAAAGAACCAAAAACTCAGTGTCTACTGGCTGGATAACACTGATAAGAAAGTGTTCTAGCTAAAGTAGTGGCGGCGTGGATGATAGTCAGCTGCCCCCTCGCTGAAAGAATTGTAAAATCTGGACAAAAATGTTTGGATTTTATATCATTTTGTTTTGTTTTAATTCTAAAATGTTTAAGATTACTTAAAACATGGAGACACTTTGTCTTGAAAGAGAGATAGATAGCACCGAATCATAGCAAAAGTTTATTCATCCACACCTGCAAGGAAAATAAGTCTAGGTGCTAAGACATTCTTGTTTTGTGTTGGTGGTTTTGTTCTTTTGATATAAGATCTCACGGTGTAACCCTGGCTAGCCTAGAACTGATAGAGATCCTCCTACTTCTGCCTCTCAAGTGCTAGAATTAAAGGTGTCTATGCCTGATGACTAATAGAATCCTCAACAAATATAAAAATCTAGTAACCGAAAGTACATTATCTAATCTCAAGAAGTAAAAGTAGAAGTCAGTAAAGAAATTTACAACATTTGAACATTATATAAAATATACTTCTAAATATCTATTGGTAAAGAAGTCAGAAGGAAAACTGGGAAGTATGTGAAATCCATAAAAATGAAAACATCATCTCAGAACGTCAGAATTTGCCAGGGTTCATCTGAAGTATTAGCTCCTAGTACAATATGTTTGCTTTACAAAAAGAAAAAGTGTAAATCAAGGACCTAGGGACAGACCTATTCCTAGTCTTCCATTGTAATATCTAAACAGCATATTAAACTGAATATCAAGTTGCAAGAAAGTGATAAAATAGACAGATATCACAGAAACAGAATAGGGAGAAGAGAACAAGAAAAGTAATCAAACCCAACATCTAAGTTTTAGAGAAGTTGGATAAAGCAGAAAAACCTATATCAGATTGGTGTATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTATGTGTGTGTGTGTTGCAATATTAAGAATAAAAAGGAGGACATCACTAAAGATCCTTCAGACGTTTAAAGATGATATTACACATAGTTTCATGGCCATCAGTTTGACAACCTAAATGAAACTGACATTTCTCGAAGACACAAGATACCAACTTCACTGGAAATAAAGATAACCTAAAGAGTCCTTATCTCTAGAGAAATAAAATCTATAGTTAACAGCACTTTCCTGAGACCAAAAATTATAAATGATATAATAAAATTAGCAGCAACATCCTTAAAATATAGCACTAAAATGCCCAATAAGACATGAGAAGATCAAACTTATGGTACCTAAAGAGAGAAGTCTCTCATGACCAAGTAGGACTTGCTGGTGTAACGAAGGGTTACAAGTCTGCTTCAGTACAAAGTTAATCAGTGCAATTCATTATTGAGAGTTATATATATTCCCTAACCGGGTGTACAGTCATTTTTTTAGATGAAAAAAGAGGAACAACTACAAAAACTAAGTAAGAGTATTTGACAGAATTCATCGTCTTTTCATTGTAAGACTCAGCAAACTAGGAGAAAAATTATTATCCCTTCATTGATAAACAATGTCCTATAAAAGTCAACATTATGGTAAAAGACTCGATTTTTTTCTAATTAAGAAAGGATCTAGCTAAATAAAATCTAATCTCACCACTCTGTTCAGCACTATCTGTGCTGGAGGGCCTGCCCAGAACAATAAGCTATGAGAAATAAAAGGCAAAGAGTGTAAAACTGTCCCTGAATACACCTTGAGATAACACACACACACACACACACGCACGCATGCACGCACGCGCACACACACACACACGTGCGCACACACGCACACACATGCACACACACATGCACGCACACACACACACACGCATGCACGCACGCACACACACACGCGCGCACGCACACACACACGCACGCATGCACGCACGTGCACACACACGCGCGCACACACGGACACACATGCACACACACACGCACACACATGCACACACACACACGCACACACACGCACATGCACGCACGCGCACACACACACACACACACACGCACACGCGCATGCACACAGCAGTACCAGGTACTGGCAAGGAGATGGAGTAGTTGGAACTGAGACATTGCTGGTAAGAACAACACAAAGTGGAGCAAGGATTTTGTAGAATACATTTGAAAATTTTTTATACACATACACTGAAATAAATATATACGATAATATATTATGTATTACTTTTATTGTCACTGTGACGAAATACATGATAAGAAACAAATTAAGAGATGACATTCTGGCTCATCACCGTGCATCGTGGAGGTAAGGGCATAGTCACAGGCATCTCCTTGGTGACAGCATTGTGACTAGGATTTCTCTAATCTTAGCAGAACAAGAAACAGAGAACAGACAGGAAGTGGAACAGGGTTATAAAACTTTGAAGTCCACTCCCAGGGTCCCACTTCCTCCAATGAGGTTCTACAGTTCTACAGCTTCCCCAGCTCATGCTCGAATATGGAGGGCGTCTGGTCCGTTTGGCATTCAAGCCACTGCATGTACCACACAATCAGCAGCCCACATTAAATGCAAACATGCAAACAACATGTTTAAGGATGTTCTGGCTTCATTATTTACGACATCCCAAACTGGAAACACATTTACCTTATGAAATGAGGGACAAATACCTGTTGCTAATAGAAACAATGAATTAACACTCAGGAACCAAAATGAGTGAAGTTTTAGTTTATGCAAAACCAAAAGTGGATCCCACGTTCCTTTTACTTAGTGAATAGTGAAATGGTGAAAGGCAGGTGGTCCCCTCACATGATAGGAATAGAAAACAGACCAATGGTTGGCCTGTTGTGGAGTGAAATGGTGAAAGGCAGGTGGTCCCCTCACATGATAGGAATAGAAAACAGACCAATGGTTGGCCTGTTGTGGAGTGAAATGGTGAAAGGCAGGTGGTCCCCTCACATGATAGGAATAGAAAACAGACCAATGGTTGGCCTGTTGTGGAAGTAGGAAAGCAAGCGTGTGTCGCAGCAGACCTGGAGAAAGTTTAGAGCGCTGGAACTTTTCTGTGTGTGGACTGTGTGCCCCTTAACGTGTTTTATTCAGAACTCCATTGTACTTGAAAAGGTGTGTTTCACAACATTCAAATTATAACCAACATCCCTAACTAAATATTGCTAAAATTTATAATCATATTTATTCATATGTTATAAATAATATAACAAATATTGTATAACTAAATAAAAGATTAGTTGACCTGAAGACAGGTCAGTGGGAATCCAACATAATTTATGAAGAATTTTTTAAAAAGAGAATTGGCTTACAGACTTGTGAAGAACATTAAGTACGAAAATATAAATGTAATTGGCACTCAGGAAAAAGAAGCAAAGAACAGTATAGGAAATCATTTGAGCCAGGTATGGCTCTTATGTATGTGCAGTCTTTCAAAATAAGACCCCATCTCAACATATAGTTGAAATTTACTTGAATAAAAGCTGACAAAAATTGACCAAAATTGTATTCAAAACCATCTCAGATCTAGGAAACTCAGTGAACTCTTTCTGTCTCTCTGTCCTTCTCTGTCTGTCTCTGTTTCTGAGAGACAGAGAGAGACAGACACAGAGACACAGAGAGAGACACAGAGAGAGTGAGCAATTTGGTAGGTTTTAGTAGTTTGCTACTTTAAAGAACCACTAAAGCAGTAAACAGTAAACAGCTGGTTCCTCTTAATTGGTGCTGGGAGATAATGGTGTCTATTAAAACAAAATAATTAACCTATGATCTTTCATCAGGAAGAAAGCCTCCAAGACAGAGTGTTTAAAATAAGTGAACCATTTCCATATAAACCAAAGCTGAGAACCTTACTAGCCAACCTCCAAGAATTGTTAAAGGAAGCTCTGGGCTGAAAGAAATAGACACTCAGGCCCACATGATCTGGTCTTAGCTGCAGCTCGATTTCACCTCACAGTGTACTCTGGCATATCCACAGTGCCTAGCCTAGCAATTTTTATCCCTCTCCCAATCCTTTTTGTAGATTATGAATCAGTCTAATAGATTGTGACTCATTTCACTTCTTAAGGAATATGAAAAAATGGAAAATACCCTGTGTACTGCCATAGGTTGAATTTCAATGTGAACTTTTGAGAGAGCTGTGTGCTCATATATTTAGAACATAAAATATGTTCAATTCTAAGTTGTAGTTTTGAAAGTTTCAGAAAACTGATATGAAAAATAAAACCAGATTTTTATTAAATTCTTTGCGGTTTTCCTCTTTTCAG
Seq C2 exon
TGGTAAAATGTCCATTTCCAGTGCTACAAAATGGAAGACAGATATCAAGAACTGAAAAAAAATTTTCCTACCAAGCACTAGTGCTGTTTCAGTGTTTGGAGGGATTTTACATGGAGGGCAGTAGCATGGTGGTCTGTGGTGCTAAGAGCTCTTGGGAGCCCTCTATCCCACAATGTCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917:ENSRNOT00000057151:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]