HsaINT0031224 @ hg38
Intron Retention
Gene
ENSG00000073754 | CD5L
Description
CD5 molecule like [Source:HGNC Symbol;Acc:HGNC:1690]
Coordinates
chr1:157834407-157836155:-
Coord C1 exon
chr1:157835835-157836155
Coord A exon
chr1:157834749-157835834
Coord C2 exon
chr1:157834407-157834748
Length
1086 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTCTCTTTCTTTCCCCTCAGACC
3' ss Score
13.16
Exon sequences
Seq C1 exon
CGTCTCCATCTGGAGTGCGGCTGGTGGGGGGCCTCCACCGCTGTGAAGGGCGGGTGGAGGTGGAACAGAAAGGCCAGTGGGGCACCGTGTGTGATGACGGCTGGGACATTAAGGACGTGGCTGTGTTGTGCCGGGAGCTGGGCTGTGGAGCTGCCAGCGGAACCCCTAGTGGTATTTTGTATGAGCCACCAGCAGAAAAAGAGCAAAAGGTCCTCATCCAATCAGTCAGTTGCACAGGAACAGAAGATACATTGGCTCAGTGTGAGCAAGAAGAAGTTTATGATTGTTCACATGATGAAGATGCTGGGGCATCGTGTGAGA
Seq A exon
GTGAGTATGGCAGGGGTCCCGGACCACTTGCCAGCTGCCATACCCCTCACGGCCACTCTTGTTGGTCTTCATTCCCTACCATAGACGTTCACACAATGGCTAATTGGCCCCTCACCCCCCACATCTCATACTTTCCCAACTGTCAGTGCTGGAGATAAACAATATCCTCACCTAGAACTGCAATTCCTACTTGGTTGAGCAAATGCTTTCATCTTAGTTTCAATCTATATGAGAACTTGTTTCTCTTATTTACACACATGCCAACATGCACACCACTAAACATTTGTTGAATAGAGTATACTGTATCTGGAGCTGGGCATGGAGTTATGGGGGAAGAAATGAGCTCACAAAGTATAATGTATGCTTTTTAAAAAATAGTTTCAGTTTTCCAGGAGTTTATCTTCTAATCAGGTAGAAAGGAGATACTCATAGGAAACTAACACAATCTAATAGACAGGTGGATAGATGATAGAAAGATACATAGACAAACGGATCTGTGCTCCTTTACTTCCCCCCACATACTTGCTTTATATGTATGAGTAGTCTCTTCTCTTTTGTTCATTAGACAGCGATGTGATTGAGGAGCTAGTCCATGGCTCCTCTTTGTCTGCCCACAGAATTTGTTTCTAGGGAAACAGTCACTTTTTGCCTTGACATTGAAGACTCAGTCCTATTTTTTAGAAAGATTGAGGGTTGGGAGCACTAATCTGAGATATTTAGTTCATAACGCCAACAATGAACCAAAAAGCATTTGGTGTTGGATATATCTTGTATGTTATTGTATTTATTTTTAAAAGTCTATACAAGATCTCTTGTGAGGATCAAATGACAAGTTGAACATGAAAACAATTTGAAAAATTAAAATGCTACAGAAATGATAATGATTCAGCTTTGAATTTGGAAGTTACATTTTCTTCATTGATTCCCTCATTCATTCTTTCAGCAGGCATCTATGAGGCAGTGTTAAGCACTTTAGCATGCCTTGTACTGAACACCAAGAACTGTGAGATGTGTCCATTGGGCCGCCTTTACTGAGAAGACCATGTTCTGGCAGAGAACAGACACGCTCTCTTTCTTTCCCCTCAG
Seq C2 exon
ACCCAGAGAGCTCTTTCTCCCCAGTCCCAGAGGGTGTCAGGCTGGCTGACGGCCCTGGGCATTGCAAGGGACGCGTGGAAGTGAAGCACCAGAACCAGTGGTATACCGTGTGCCAGACAGGCTGGAGCCTCCGGGCCGCAAAGGTGGTGTGCCGGCAGCTGGGATGTGGGAGGGCTGTACTGACTCAAAAACGCTGCAACAAGCATGCCTATGGCCGAAAACCCATCTGGCTGAGCCAGATGTCATGCTCAGGACGAGAAGCAACCCTTCAGGATTGCCCTTCTGGGCCTTGGGGGAAGAACACCTGCAACCATGATGAAGACACGTGGGTCGAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073754:ENST00000368174:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=86.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGACATTAAGGACGTG
R:
TGTCTGGCACACGGTATACCA
Band lengths:
342-1428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development