HsaINT0031533 @ hg38
Intron Retention
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]
Coordinates
chr3:48164307-48165734:-
Coord C1 exon
chr3:48165636-48165734
Coord A exon
chr3:48164438-48165635
Coord C2 exon
chr3:48164307-48164437
Length
1198 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GGTCTCTGTTGTCTTCACAGGGT
3' ss Score
9.44
Exon sequences
Seq C1 exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCAACCTCATTAAAGAGTTTGTTATCATCGACTGTCGATACCCATATGAATACGAGGGAGGCCACATCAAG
Seq A exon
GTATGGATTCCTGAGACTTGCTGTAGAAGGAGCCCTAAACAGGATCTGTGGTTTTAAAGTGGGGAGGACAGTGACACCTGGCCACTTAGCTCATATGCTAGTTGTTAGAATTTTGAAACAATACAGTGAGTGTGGAAGGCATTTGATTCCGGGTGCTCTTAACGAATGTTCCCTTGTCTGCAATACTCTCTACCACCTTGTGCACAGTTATTCTTCATGTTTGTCCCTCACACCATCATTATCAAGGACACTTGTAGGAGGTACCCACTGATGTTTAAGTCATTCGGGGGACAAGAATGGGTTTCATAGCATTTAAGAGGCTTGGGTACCAATGTCTGAGCACCCCAGGGCTCCTGATGAGGAGAAGACCATCTCTGGCAACATGTCCTGGTGTCTGTGCCAGGCCTAGTGATGCCTCCAAAGTTGATTGTTCAGCAAGCTGCCTGGTGGAGGGGCGTGTTGGGACACACGTTCCCAAGAAGAAAGGAACTGATTTTGCCATTTTAATCTTTTTTTTTTTTTTTTTTTGAGACAGAGTCCGCTCTGTCGCCAGGCTGGAGTGCAGTGGCATGATCTCGGATCACCACAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGACTACAGGTGCACGCTGCCACGCCCGGCTAATTTTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCATGTTGCCCGGGCTGGTCTCAAACTCCTGAGCTCAGGCAAACCGCCCGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACGGCGCCTGGCCTGCCATTTTAATGTTTTACCCGATTAATAGTGTTTAAATATAGTAAGGAGGTACTTTAAATACGATGTTACTGTTTGCCATTGTCTTGTGGCTTTTGAAAATCCCCAAATTTATAAAACTACCTATAAAGTGTACCATTGTCATATTTGAATTGCCCATTTCCAGTCCCCATGTGCATTACTGTATGATGAACGTGTACGGACCCACAAAGCTCCATTGAGATACAGGTGCCAAATGGTCTACTGGGCTATTCAGCTAGAAGAACTGCAAAAATCACAAACTGGTCTTGTGGACTTAAAGATCACTCTTGATGAATCATTACATCTTGCTGAATCATTACTTCATGTGTGAAACGTGCAGGTTCCAAGGGTCTCTGTTGTCTTCACAG
Seq C2 exon
GGTGCAGTGAACTTGCACATGGAAGAAGAGGTTGAAGACTTCTTATTGAAGAAGCCCATTGTACCTACTGATGGCAAGCGTGTCATTGTTGTGTTTCACTGCGAGTTTTCTTCTGAGAGAGGTCCCCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045:ENST00000302506:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.9=84.8)
A:
NA
C2:
PF0058115=Rhodanese=FE(39.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCTGTTTTGAATGGCA
R:
GACCTCTCTCAGAAGAAAACTCGC
Band lengths:
222-1420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development