DreINT0043706 @ danRer10
Intron Retention
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14787951-14788381:-
Coord C1 exon
chr13:14788283-14788381
Coord A exon
chr13:14788197-14788282
Coord C2 exon
chr13:14787951-14788196
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCCTCTTTGTCGTCTTTCAGGGT
3' ss Score
12.38
Exon sequences
Seq C1 exon
ATGGTTAAAGCAATGAGTGGACAGTTTCAAGATCTAGTGGAGAGGCTGTTTGTTATCGACTGCCGTTATCCGTATGAGTATGAAGGCGGCCATATTAAA
Seq A exon
GTAAGAGTCACTTGCAGCTTTATTAAATTGGCTACAGTGGTTTGTAGTATTGAGCAAATTTTTAACTCCTCTTTGTCGTCTTTCAG
Seq C2 exon
GGTGCTCTTAATCTCCACCAAGAGGATCAAATCGAAGACTACTTTTTACGCAGTCCTATTCTCCCTGACTGCCCCAAGAAGCGCGTCCTGCTGATTTTTCACTGTGAATTTTCTTCAGAGCGTGGTCCACGGATGTGTCGCTACGTTAGAGAAAGAGATCGATTTGTGAATGAATACCCCAACCTCCATTACCCCGAACTCTATATCCTGAAAGGAGGCTACAAAGAATTTTTCCAGATTCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792:ENSDART00000020576:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.9=84.8)
A:
NA
C2:
PF0058115=Rhodanese=PD(72.2=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGAGTATGAAGGCGGCC
R:
CTAACGTAGCGACACATCCGT
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]