HsaINT0031548 @ hg38
Intron Retention
Gene
ENSG00000101224 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr20:3803108-3803537:+
Coord C1 exon
chr20:3803108-3803206
Coord A exon
chr20:3803207-3803403
Coord C2 exon
chr20:3803404-3803537
Length
197 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACCTCTGGCTCCTCTGACAGACT
3' ss Score
8.39
Exon sequences
Seq C1 exon
ATGGTGGCCCTATTGACGGGCAAGTTCAGCAACATCGTGGATAAGTTTGTGATTGTAGACTGCAGATACCCCTATGAATATGAAGGCGGGCACATCAAG
Seq A exon
GTAAGATGGGGCAATGGGGAGAGGCCCTGAAGATCCCACCTGGTTTAGGTCCTTGCTTTGCCAAGAGGGTGAATGGGTGGAGGACGGGTGCCCCCTCTCATGGGGAGGGTTCCTACTAAGAGAAGGACAGCGACTGCACGGGGAGGGCCCTGACTCCTGGACCCGGGGCTGTGCCTGACCTCTGGCTCCTCTGACAG
Seq C2 exon
ACTGCGGTGAACTTGCCCCTGGAACGCGACGCCGAGAGCTTCCTACTGAAGAGCCCCATCGCGCCCTGTAGCCTGGACAAGAGAGTCATCCTCATTTTCCACTGTGAATTCTCATCTGAGCGTGGGCCCCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101224:ENST00000344256:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
NA
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGCCCTATTGACGGG
R:
GCCCACGCTCAGATGAGAATT
Band lengths:
226-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development