RnoINT0032523 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123738885-123739303:+
Coord C1 exon
chr3:123738885-123738983
Coord A exon
chr3:123738984-123739169
Coord C2 exon
chr3:123739170-123739303
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACCCCCAGATCCTCTGACAGAAT
3' ss Score
2.95
Exon sequences
Seq C1 exon
ATGGTGGCCCTGTTGACAGGCAAGTTCAGCAACATCGTGGAGAAGTTTGTAATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
Seq A exon
GTGAGACGGGTGCTGGTAAGGCCAGGCCCTCCATTCAGATTCCTTGCCGAGAAGATGAATAGCCTTCCATGGTGAATTTCCTATGGGGAGGATTTCTGCTCAGCAAGAGGTGGGGTTACTTACCTGGGAACTGAACAAGAAGGGCCATGGTGCAGGCTTCAGCTTGACCCCCAGATCCTCTGACAG
Seq C2 exon
AATGCTGTGAACTTGCCCCTGGAACCGGATGCCGAGACCTTTCTGCTGAAGCATCCCATCACGCCTTGTAACCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCATCTGAGCGTGGACCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
NA
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGCCCTGTTGACAG
R:
TGGTCCACGCTCAGATGAGAA
Band lengths:
228-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]