MmuINT0032744 @ mm9
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131020075-131020495:+
Coord C1 exon
chr2:131020075-131020173
Coord A exon
chr2:131020174-131020361
Coord C2 exon
chr2:131020362-131020495
Length
188 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACCCCCAGATCCTCTGACAGAAT
3' ss Score
2.95
Exon sequences
Seq C1 exon
ATGGTGGCCCTGTTAACAGGCAAGTTCAGCAACATCGTGGAGAAATTTGTCATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
Seq A exon
GTGAGACAGATGCTGGTAAGGCCAGACCCTCCATTCAGACTCCTTGCCAAGAAGATGAATAGTAACCTTCCATGGTGAATTTCCCATGGGGAGGATTCTGCCCAGCAAGAGGTGGGGTTACTTACCTGGGAACCGAACAAGAAGGGGCGTGGTGCAGGCTACGGCTTGACCCCCAGATCCTCTGACAG
Seq C2 exon
AATGCTGTGAACCTGCCCCTGGAACGGGATGCTGAGACCTTTCTGCTGCAGCGTCCCATCATGCCTTGTAGCCTGGACAAGAGAATCATCCTCATTTTCCACTGTGAATTCTCGTCTGAGCGTGGACCACGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-Cdc25b:NM_023117:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
NA
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGCCCTGTTAACAG
R:
GTCCACGCTCAGACGAGAATT
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: