HsaINT0031730 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64595158-64597542:-
Coord C1 exon
chr11:64596943-64597542
Coord A exon
chr11:64595256-64596942
Coord C2 exon
chr11:64595158-64595255
Length
1687 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GGTGCCTGGCGTGCCCGCAGGGT
3' ss Score
8.02
Exon sequences
Seq C1 exon
ACATCTTCCAGGTGGGGGAGTGCCGGCGCGTGCAGCAGCTGACCTTGAGCCCCAGTGCAGGCCTGCTGGTCGTGCTGTGTGGCCGCGGCCCCAGCGTGCGTCTCTTTGCCCTGGCGGAGCTGGAGAACATAGAGGTAGCAGGTGCCAAGATCCCCGAGTCTCGAGGCTGCCAGGTGCTGGCAGCTGGAAGCATCCTGCAGGCCCGCACCCCGGTGCTCTGTGTAGCCGTCAAGCGCCAGGTGCTCTGCTACCAGCTGGGCCCGGGCCCTGGGCCCTGGCAGCGCCGCATCCGTGAGCTGCAGGCACCTGCCACTGTGCAGAGCCTGGGGCTGCTGGGCGACCGGCTATGTGTGGGCGCCGCCGGTGGCTTTGCACTCTACCCGCTGCTCAACGAGGCTGCGCCGTTGGCGCTGGGGGCCGGTTTGGTGCCTGAGGAGCTGCCACCATCCCGCGGGGGCCTGGGTGAGGCACTGGGTGCCGTGGAGCTTAGCCTCAGCGAGTTCCTGCTACTCTTCACCACTGCTGGCATCTACGTGGATGGCGCAGGCCGCAAGTCTCGTGGCCACGAGCTGTTGTGGCCAGCAGCGCCCATGGGCTGGG
Seq A exon
GTAAGGCCTGCTGAGGGCTTGGCAGGGGGGCCAGGCACCTTCAGTGGGTGGGTGAAGACAGGGTCCCGCCTCAACTCATGAGCCTGGCATTGGAGGCCTTTGGTGCCAGTTTGCATCCTCCAGCCCAACAACACCCTGTCCCACCCTCTGTGGCTTGCAGGGGACCTTCCTTTTCCATGGCTGAGCTCATGCTCCTCTCCTGCCTGAGCCGCTCTCCTTTTGTTTCTATCTAGCAAACTTTTTTTTTCTTTTGAGACAGGGTCTCTGTCTGTCACCAGGCTGGAGTACAGTGGCACAATCTCGACTCACTGCCACCTCCGCCTCCTGGGGTCAAGTGATCCTCCCACCTCACCCTCTCGAGTAACTGGGGGCACAGGTGTGTGCCATCACGCCTGGCTAATTTTTGTTTTGTTTTGTTTGAGACAGAGGAGTCTCACTCTGTCGCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTTTGCTTCCCGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGTGCACGCCACCACACCCAGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTTAGCCAACGCGTCCAGCCTAATTTTTGTATTTTTTCAGAGATGGGGTTTCGCCATATTGCGCAGGCTGGGAGTCTCAAACTCCTGAACTCAAGCAATCCTCCCGCGCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGGCCCCGGCCTGTACCTGGCAAACTCTTAACTAGGTACCACCCCAGTGTCAGCTCAGGGCCTGGAGCTGGTAGGCGCTCCAAAGATAACCGCTGCGATTGCTGTGGTCACCATTGCCTTCGTGCTCCCCGCCCTGCTTCCCCGTCATTGGTCCTTTCCTTCTCTTTGCCCCACTCTCTCTCCGTCCAGACCTGTGTCACGGCTCTCATCGCCTCCACTTCATGACTGGCTTGGTGCACTGGGGTCCCACAGAATGGGCCGGGGCTGGTTTCCTCATCCACATCAAGCCCCCAGCCCAGGGTGGCACACTCCAGGGGCGATGGGCTTGGAGGAATGAGTGGAAGAGTGAATGAATGAATGAATGAGGCAGTGGGGCAGTCTGGTGCATGCACAAGTAACTAGCATGATGGGTAAGGGCTGGAAGAGAGGGGCAGAGTGTCCTTCGTGAGCAATGGCTCTTTGGGGTGGGGCCTGCAGGTTGGGTGCCGCATATCACCCAAGCTGCCCAGGGCCAAATCGCAGCTCTCAGGACCAGCTGAGTGACCTGACCTTGACCATCACATGGCTCCAGGGGTTCCATTCCCTCATCTGGAAATTAGGGATTATAACAGTAGTACTTGCTCAGAGTTGTTAGAAAATTAAGGCAGGAAAAGCATGTCGTGTTTAGAACTGAGCCAGGCATGTGGTGAGTGGTCCAGGGTTATCTCTGATTTGATGTGGAGGCTGGGCCGGGCGACAGGGAGTCTTCAGAGGAAGGACCTTAGCGTGGGGCATGGTAGTTACTGTGCTGTGGCAGGGGACAAGGTGTTCCCTGTGGAACAGAGGGGGAAACAGCTCAGAGGTGCCTGGCGTGCCCGCAG
Seq C2 exon
GGTATGCGGCCCCCTACCTGACAGTGTTCAGCGAGAACTCCATCGATGTGTTTGACGTGAGGAGGGCAGAATGGGTGCAGACCGTGCCGCTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.9=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCCACTGTGCAGAG
R:
ACACATCGATGGAGTTCTCGC
Band lengths:
348-2035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)