RnoINT0032694 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221688109-221689745:+
Coord C1 exon
chr1:221688109-221688708
Coord A exon
chr1:221688709-221689647
Coord C2 exon
chr1:221689648-221689745
Length
939 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
AGGCTGTTTCCCACCTACAGGTT
3' ss Score
9.3
Exon sequences
Seq C1 exon
ACATCTTCCAGGTGGGAGACTGCCGCAGGGTGCAGCGGTTGACCGTGAGCTCTGCCGCTGGCCTACTGGTCGTGCTCTGTGGCCGTGGTCCCAGTGTGCGCCTCTTCACCCTGTCTGAGCTGGAAAATGCAGAGGTGGCAGGTGCCAAGATCCCTGAATCCCGAGGCTGTCAGGCTTTGGTGGCTGGGAGCATCCTACAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAGCGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTACAAGCGCCAGCTCCCGTGCAGAGCCTGGGGTTGCTGGGTGATCGGCTCTGTGTGGGTGCCGCTGGCACCTTTGCTCTCTACCCGCTGCTCAATGAGGCTGCGCCCTTAGCGCTGGGAACCGGCCTGGTGGCTGAGGAGCTCCCCGCGTCCCGTGGGGGCCTGGGTGAGGCACTGGGTGCTGTGGAGCTCAGCCTCAGCGAGCTTCTGCTGCTCTTCGCCACTGCTGGCGTCTACGTGGATGGCGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGTGGCACCCACTGGCTGGG
Seq A exon
GTAAGGCTGGTAGAGGGCCTGGCAGGGTGGGTCAGGCATTGGGGGTCCTGTGACCATATTGTGGCCTGAGTAGCTTGCTTAGGGCCATCCTCACTCCGTTCTCTACCTGGCCATCTTTTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTCCTAGTCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCTACCTGGCCATCTTGAATGGCAGTCCCAGCCGGGCAGTTAGCCACTCTGTAACCGACCATCACATCCCGAGCGCTGCCTTTGATTGCCTCCCTCCCCACTACTGTGCTCTGACTCCTTCTCATGCCACCTCTTGGTTCAGACCTCTGTTCTGGGTCTCGCCATCCGCTTTGTGACTGCTTTTGTGCACTGGGGCCTGAAGAACAGGCTAGGGCTGGCTCCTTCATCTGGCCCGCCTGGGCAGGCACGCCCTGGGGGCTATGCTTGCTGAGAATGAACAAACGAACTGAGGAGAGGCATGGGTTGGTGTGGTCACTTGTAGCCGATATGATGGGCTGGAGGTAGGAAGGGGACAGTGTCCTTTATGGGCAGAGGCCCATCTGTGGTAAGGCTGGGGTTAAGTGTAACAGATTGCCACTGGCCGGGTCTCCTGTCCCTCACCAGCTGTATCACCTTGACCATTATTTTGCTCTGAGATTTCCATTACCTCATTTAATGTCCAAGATCGGGGTGATTATAGTACCTGCTCCTACCTGGAGCTGCCGGAGAGTTAAGGGAGGACAAACATGCCAAGCATTTGCCACTGTGTGGGCATGTAGTGAGGGCTATTATCTCATCTGTTCTGGAGTTGGGCGGGGCAGGCCTCCCTGTGGGACAGAGGAAACAGGCTCAGAGAGGTGCCTGACTTGCTCTGGGCTACACAGTACAGGCTGTTTCCCACCTACAG
Seq C2 exon
GTTACACAGCACCCTACCTAACAGTGTTCAGTGAAAACTCCATTGATGTGTTTGATGTGAGGAGAGCAGAATGGGTACAGACTGTGCCACTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.9=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGATCGGCTCTGTGT
R:
ACCCATTCTGCTCTCCTCACA
Band lengths:
344-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]