BtaINT0035062 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69283460-69286495:-
Coord C1 exon
chr21:69285899-69286495
Coord A exon
chr21:69283558-69285898
Coord C2 exon
chr21:69283460-69283557
Length
2341 bp
Sequences
Splice sites
5' ss Seq
GTAGTATGT
5' ss Score
3.71
3' ss Seq
CTCTGCTCCGTGTGCGCCAGGTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGATCGTCCGTGTGGCTGACTACAAGAAGGTGTACCAGATCGAGCTCGCCCCCAAAGAGAGAGTCGCCGTCCTCCTCTGCGGCCGGAACCACCACGTCCACCTCTGTCCGTGGTCCTCCTTCGATGGGGCCGAGAGCAACATGGACATCAAGCTTCCGGAGACAAAAGGCTGCCAGCTCATAGTGACCGGGACGCTGAAGAAGAGCGGCCCCACCTGCCTGTTTGTGGCAGTGAAGCGGCTGGTCCTTTGCTATGAGATCCAGAGAACTAAGCCTTTGCACAGGAAGCTCAGCGAGCTTGTGGCCCCTGGCAATGTGCAGTGGATGGCCGCAGTCAAGGACAGGCTCTGTGTTGGCTACCCTTCCGGGTTCTCTCTGTTGAGCACCCAGGGAGATGGGCAGGCTCTAAACCTGGTAAATCCCAATGACCCCTCGCTTACGTTCCTCTCACAACAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAAAAGTGAGGAGTACCTGCTTTGCTTCAGCCACATGGGACTGTACGTGGACCCACAAGGTCGGAGGTCACGCGCTCAGGAGCTCATGTGGCCTGCGGCGCCCGTTGCCTGTA
Seq A exon
GTATGTATATGTTTTCTGTTGCCATACCCCGTCGCCGCTGCCGCCCCGCCGGTCAGCACGTGTCCTCTCTGCCTTGGTCTGTCCTCCTGCCCCTCAGCCGAGTGCTCAGGGTGGGCGGCAGGAGAGGCGGACTCCCCAGCTTGCTGCGGAGGACAGGGTGGGCCTGGGCCATTCCCTGGCCGGTCAGCGGGGCTTGCCCACCCCTCCCTCGGGGGGCCCTCAGCTGAGGAGCCAAGCAGCCGGCTGGCCTCGCCAGGGGGAAAGCAAGGCGAATGGGAGAAGGACCTGCGTTGTTTCACTTTTTAAAAGACATTCTTGATGACGTGTAAACTTTACACAGTCATGACAATAAGCTAAAGGTTTCCTTGGGCAGAAAGTACACGGCCCTGACCTCTGGGCTGGGGTCCTCTCGGGACAGACGCCGTGCTGCAGGCAGGAGCCACTCTGGGTGGTCAACCGAGTGTCCTTCTGCCAGGATGATGGCGCCGGCGACTGGAGTCTGTGCTCCACGCCCTGCTGGCCTGCCGTCTGCTCTTGTGTCAAAAAGCCTGACCTCAGATCCCACCCACTCAATACAGGGCGTAGCAGGTGGTCTGCGTGGTCACCCGCGGGTCACACGTCTATTTCAAGCTGGCAGGGTAGGAGGAGGTGTTCTGTTTTTCCCTGATTCCCTAGAAGTACTTCTTGGGTCTGCCTTGTCGCTGGCCTCACCAAACTGGCAGAACACCCACGGGCACTGGGACCAGGAGCCAGGGGCCAAGGGGAGCTGGCTCTTTCTCGGCCTTGTTCGCCTTTGGCCGGGGCCCGGGCATGATGCGGGCAGCTGTGGCCTCAGCATCTCCCCTCCTGGTCTCCCCCGCCGTGCCCCCTTGTCCTTGTGGGTGGCCAGTGCAAGAATGGGCTCGCGGCCACCTGGTAACTCCAGCAGGATACAGGTCGCTGGGAGCCGCGCATTCTGATCTCGGCCGTGAGGTTGCTGCATTCTCTTCCGAGTCCAGCCCTCTCCCCTCCTCTGTGCTCGGTTCATCTGTGCACAGTACAGACGCCAGCCAGTTCTAGAGCTGCAGGACTCATTCAGGAGCTCTCAGGGTGGAGACCTAGCCCTGCTTCCTGCTCATCACGAGCCCCACGTGAGCACGCGCATGTCCTCACACACAGACACCACCCCACCCCGGTCACAGGAGCCCCATCCTTCCAGGAGCCACACAGGGCAGTGACCTGCCCACCAACAGCAGGGGCCTTCCTGCTGATTTAACCGGTTACTTTTTTTTTAACTGGGCAGCTGAGTGTATCAGTCTGTCAGTAAACTGTCTGCAGATGGAGCCCCACGTGCTCCGGCGTGAGGGGAGCAGCTCCCGGAGCCCCCGCATGGGCGAGGTCTCTGAGGTCTCTCAGGGCCCTCTGGCCATCTTCGTCAGGTGTGGCACTCAGCAGGCCTCACGGTTTGTCTGAAATGTCACCACCAGGACGGTTTGGCGACTAGTTTAGCGTCTTTTGTTCCCTAAACCCTGTTGTATTTTCTTTGTTGTGCTCCAAAGAACAGGTGTGATCAGGCGGCCCGTTTGGAATCTAATATCAACATAGCAGAAGCTTTTTAGAAATTCAGTTAAGTGTGATGTGGCGAGGAGTGACTTTCAGCCCTGGGACGTAGGAGGACAGGAACCTAGGCTGAGCCAGAGCCCCCTGCCTGCTTGGCATGACAGCTGCGCCCTCCAGGATGCTCTCTGGGCCGGCTCACGTCTGCCCCGCTGTCCTAGCAGTGGGAAAGTCCCCATGGACCGCAGGTGCCGCGGGCCAGCAGGCCTCCGTCTCCTAGTCCTGCCCCAGGAGGGTTTTCCATCCAGACCTGTGGCGGGAGGGGGAGAGCAGCAGGCCCCCAGCCCATGCAGGAGAGTGATTGTCATCGTGTATGTTCAGACCGACTGTAGGAGGGCGGCCTGCAGACAGCTTCAGGGAAGGCCAGCACCTCACTCAGAGCACAGCGATAGTTTGGGGGAGATTTTAACTGTTTACTCAGAAGTCTGACTCCTGGAATCTCAAAGGAGTTGTTTGCCTTAAGGAAAAAACGTTAGGTCCCTGTCTGGATTTGCGATGCATTCAGCCTGAACAGTAATAAGCTTCTGCTGGAACTGTATAATAAGCAAGCTAAATGAAAAACGAAGTTTTGAGTAGGTCGTCGTCAGTGCTCAATGTGCAGTGGTATTTAACGCTGTCAGATGTCAGGAGCGGAGGTTCCCTCCGCAGTGGGGGCCCCGGGGCCTGGGCCAAGGCACGCCCGTGCGGGTTGGTGGCCTCTGGCACCGGGCGGCCCGGGCTCACCCCTCTGCTCCGTGTGCGCCAG
Seq C2 exon
GTTGCAGCCCCACGCACGTCACGGTGTATAGCGAGTACGGCGTGGACGTCTTCGACGTGCGCACCATGGAGTGGGTGCAGACGGTCGGCTTGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.8=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]