HsaINT0031694 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102940227-102944487:-
Coord C1 exon
chr14:102943891-102944487
Coord A exon
chr14:102940325-102943890
Coord C2 exon
chr14:102940227-102940324
Length
3566 bp
Sequences
Splice sites
5' ss Seq
GTAGTATGT
5' ss Score
3.71
3' ss Seq
CCCTGCTCCGTCTGCGCTAGGTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
TGATCGTCCGTGCCGCTGACTGTAAGAAGGTACACCAGATCGAGCTTGCTCCCAGGGAGAAGATCGTAATCCTCCTCTGTGGCCGGAACCACCATGTGCACCTCTATCCGTGGTCGTCCCTTGATGGAGCGGAAGGCAGCTTTGACATCAAGCTTCCGGAAACCAAAGGCTGCCAGCTCATGGCCACGGCCACACTCAAGAGGAACTCTGGCACCTGCCTGTTTGTGGCCGTGAAACGGCTGATCCTTTGCTATGAGATCCAGAGAACGAAGCCATTCCACAGAAAGTTCAATGAGATTGTGGCTCCCGGCAGCGTGCAGTGCCTGGCGGTGCTCAGGGACAGGCTCTGTGTGGGCTACCCTTCTGGGTTCTGCCTGCTGAGCATCCAGGGGGACGGGCAGCCTCTAAACCTGGTAAATCCCAATGACCCCTCGCTTGCGTTCCTCTCACAACAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCGAAAGCGAGGAGTACCTGCTTTGCTTCAGCCACATGGGACTGTACGTGGACCCGCAAGGCCGGAGGGCACGCGCGCAGGAGCTCATGTGGCCTGCGGCTCCTGTCGCCTGTA
Seq A exon
GTATGTATATGTTTTCTGTTGCATATCCCTGTTGCTGCTTTTCCCACCGACAGTCAGCATGTGTTCGATTTTGCTTTGGTTTGTCTTCCAGTCCCTTAGTTGAGTAGTCACAGAGCATCGGGAGAGGTGGGCCCCATGCCAGCCCGCAGCAGAGAGCATGGTTCAGATCTCACGTCTCAGACCAGCAGTAGGCGGGCTCAGCAACCTCTCTCCCTGAGCACATGGGGCCGGTTCTTCCAGAGGCCTCAGCAGAGGACCCCGTCGGCGGGCATAGGCCCCTGGGCAGAAGGGCTCGGCGAACCGAGAACGGGGCGTGGCATTCATCTCTCATTTAAAAGGCCTTCCTCGTGATAATACAGAAACTTACACAGTAGTAAAGACAAGCTTGAGGGGTTTTGGTGGCCAGAAAATAATTCACCTCTGGTGTCTTAAGTTACAGTCCCTCTAAGGACAAGTATTTTCTGAAAGTGGTAGGGGCTGTTTTTCAAACAGTTGGGTCACTGAATTCGCCTAGTTGGCATGACTTTCTCTATGAATGGTGGCACTGGGGAACAGGTAGGACCAGTGGACACTTCCCGACTGGCCCGCTGTCCGATTGCTTTTAAAACCTTAAACCGGGTGGAGAGCGGTGGCTCACACCTGTAATCCCAGCACTGTGCGAGACTGAGGCAGGAGGCTCACTTGAGCTCAGAAGTTCAATACCAGCCTCATCTCTACTAAATAACAAAATATGGCTCACACCTGTAATCCCAGCACTTTGGGAGCCCAAGGCAGGGCGGATCACGAGGTTAGGAGATCGAGACCATCCTGGCTAATAGGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGACACAGAGGTTGCAGTGAGCTGAGATCGCACCACTGCACTCTAGCCTGGACAACAGAGCGAGACTCCGTCTTAAACAAACAAACAAACTAGCCAGGCACGGTGCCACATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGGATTGCTTGAACCCGGGACGCAGAGGTTGTAGTGATCCAAGATCGCGCCACTGCACTCTAGCCTGGGCAACAGAGCAGGACTCCGTCTCAAACAAACAAACTAGCCAGGCACGGTGCCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGAGGATTGCTTGAGCCCAGAAGATGGAGGCTGCAGTGAGCCATGATCACACCACTACACTCTAGCCTGGGAGACAGAGTGAGACCCTGTCTTTTAAAACAGAAAGGAAACCTTAAACCTCAGAATCCCTCTGATCTATCAGAGTGGCCTGCACCATCAAATCCACAGATCAAGAGGAGGCCGGGAGGAAGACGAGCCGCGCATATGGGGGTAACAGGCCAAGAGTTGGGGAATGACATTCTCCCTCAGTTACCTGAAGCTAAACCCCTTTGTCTGCCCCATTGTCAGCCTTGCTGAGACGGCATCATACCCAGGGCGTCGTGGCTAGACACCAGGCCTGTGAGGTGCACGGCCAGCTCCACCCACGGGCTTACTGCAGTGTGTCCCGGCTCCATCCCGATGGCCACACCACAGCAGACATGTGTGGGCAGTGGGGCTGGGCCGTGGGCCTGCGGTGAGGTGCAGGAAGGGGCCAGTCCCGCTGCCTCAGCACCCCTTGTCCTGGACTCTTACCCCCCAACACCCTGTCCTCTTCATAGGCAGCCAGCACAGGGTTTAAAACCACACAGGATTTACATTTTTGCAAAGCGTAACGTTGAAGAGGGCCCAGGTCACTTAGTGCAATGTATTTATAATCTTGGCCACACGTGTCTGGCGTAGACACCTGAAGTTCCTCGGTTCTCCGCCTTGGTGGGTCTTCTCTCCTGCGGGCACAGTGCAGATGCAGATGAGTTTCAGAGCTGGTCAAAAGTAATTCCATCACCTGTAGGATGCAGAACTGCTCATTCTGCACCCTTTGCTAGTGCCCTGTGTGGGTGGCCTCCCCTGCCCCTCCCCATCCCTTAGGGCAGGTGTTATCAGCCCTGTTGGAGAGGAGGCAGCTGAAGGCCACAGGGGCCGCGTGCTCTGTATCAGTCACATGTCACATCTGTCAGGCTCCAGAGCCCATGTTCTTTTCACTAGAATCTGTTTCACTAGAATCTTTTCACTGGGCATCTGTTTATCACTGAGTCAGCAAACTAGACTTCTTCCTGCTTCCTTGCAAGCGAATCCCCACATACTCGGCAGGCAAGGGCCTTCCCAGAAGCCCGTGTGGAGAGTGGTTCCCTGAAGGGCAGTGTCTGGGGCTGCTTTTGACTTGGTTCTCAGAGGCCTCACAGGTGCATCTGAAATGCTCCTTCTGAGACAGTTTGGTGACCAGGCCAGTATCTTTTGTCTTTCTTGCAAACCCTGTTTGATTTCCCTTTTTGTATTCAGAAGAAAAGTCCTGATCTTGTAGCCTGTTTGGAGTCTGTGATAGAAACAGAGCAGAAGGCTTTTAAAATGCATCTTCAGACAGTGAGGTGTGTCCTGATGCAGGATTAACCTTGAACTCCGGAGGCAGAAGAGCCAGGAAGGAGCACTGAGCTGGAGCTCTCTTGCATTTGGGGCTTGCCGCCTCCCAGCTCTGCGTTTCTGCAAGCTGATGGCCAGGAGCCAAGCTACGCTGAGGGGCTGTGGGGGCAGTGAGCGTGCCACCCACACAGAGGGACTGAGCGGAAGACGCACACCGCTCCCTTGTCGTGTGGCACAGCTGTGTCACTGCTCTTCTAAACGTGGAGAAAGCCCCTTAAACTCCAAATGGCCAAAGGCTTTGCAGTCCTTGGTTTCACATCCGTGGCACCTTGGGTGGAGTTGCTTCTGTAAGCCAACAGATGAGCAGGTGAGGAGCACAGCGCGGACCCCAGAGCTCCCTGCAGGACGCCCTTAGCCTCGCTTGCATATGCCCTCAGACCGGGCTGCAGAGGGGCTTCCCACGCCCCCATAGCACGGGTTCCTAGGGGTCTAGGGTCATTAGTGTGGAGGGCAGACAGGCAGGGTTGTTGCCCAGAGGTCAGCAGTGGTTTCTGTGTGGTTTTTAATACCTACCTGGAAACCGGACTTGCCATCTCCTACGGAAGAATTAGCCTCACCATACTGAACAGTCGGCCCCTACCTGAATTTCCAAAGTGTTGAGCCTGAATTAGTAGCTTTCAGGATAATCACATCTCATGAGAGCTAAATGAAAAACCAGACTTTTTAAAAGTCACCTTCAACATCTGTACTGTAGTATTCAAAATATTAGTTACGGAAGTGATTGTGGAGCATTTAAACATTGGATTGTGTTTGTTTAAACTTTGAAATGAAGATGAATTCCAGAGTGGGAACATGAAGTCTTTGGTGACGTGAACCAGCTGAGGGCAGTGCTGCCGCCTCTGCACTTGTTCAAGTGCCAAGGCTTGGCCTCCGGCCCGAGGGCAGGTGAGTTCCTGAGCCACTGTGGCTCACCCCGCCCTGCTCCGTCTGCGCTAG
Seq C2 exon
GTTGCAGCCCCACCCACGTCACGGTGTACAGCGAGTATGGCGTGGACGTCTTTGATGTGCGCACCATGGAGTGGGTGCAGACCATCGGCCTGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.8=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development