BtaALTD0004786-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69283460-69286495:-
Coord C1 exon
chr21:69286083-69286495
Coord A exon
chr21:69285899-69286082
Coord C2 exon
chr21:69283460-69283557
Length
184 bp
Sequences
Splice sites
5' ss Seq
GTAGTATGT
5' ss Score
3.71
3' ss Seq
CTCTGCTCCGTGTGCGCCAGGTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGATCGTCCGTGTGGCTGACTACAAGAAGGTGTACCAGATCGAGCTCGCCCCCAAAGAGAGAGTCGCCGTCCTCCTCTGCGGCCGGAACCACCACGTCCACCTCTGTCCGTGGTCCTCCTTCGATGGGGCCGAGAGCAACATGGACATCAAGCTTCCGGAGACAAAAGGCTGCCAGCTCATAGTGACCGGGACGCTGAAGAAGAGCGGCCCCACCTGCCTGTTTGTGGCAGTGAAGCGGCTGGTCCTTTGCTATGAGATCCAGAGAACTAAGCCTTTGCACAGGAAGCTCAGCGAGCTTGTGGCCCCTGGCAATGTGCAGTGGATGGCCGCAGTCAAGGACAGGCTCTGTGTTGGCTACCCTTCCGGGTTCTCTCTGTTGAGCACCCAGGGAGATGGGCAGGCTCTAAACCTG
Seq A exon
GTAAATCCCAATGACCCCTCGCTTACGTTCCTCTCACAACAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAAAAGTGAGGAGTACCTGCTTTGCTTCAGCCACATGGGACTGTACGTGGACCCACAAGGTCGGAGGTCACGCGCTCAGGAGCTCATGTGGCCTGCGGCGCCCGTTGCCTGTA
Seq C2 exon
GTTGCAGCCCCACGCACGTCACGGTGTATAGCGAGTACGGCGTGGACGTCTTCGACGTGCGCACCATGGAGTGGGTGCAGACGGTCGGCTTGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-38-51,39-51-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.8=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTGCCTGTTTGTGG
R:
CACGCCGTACTCGCTATACAC
Band lengths:
248-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development