GgaALTD0004586-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52423130-52426557:-
Coord C1 exon
chr5:52426145-52426557
Coord A exon
chr5:52425961-52426144
Coord C2 exon
chr5:52423130-52423227
Length
184 bp
Sequences
Splice sites
5' ss Seq
GTAGTATGT
5' ss Score
3.71
3' ss Seq
TTGTTCTTAAATCTATGCAGGTT
3' ss Score
8.34
Exon sequences
Seq C1 exon
TGATTGTCCGCGCTGCTGACTGTAAGAAGGTGTACCAGATCGAGCTTGCTCCCAAAGAGAAAATCATCATCCTCATCTGTGGCCGGAACCATCACGTTCATCTTTTCCCCTGGGCCACTCTGGACGGATCAGAAGGAAGCTTTGACATTAAGCTTGCAGAAACTAAAGGCTGCCAATTGATTACAACTGGAACGCTAAAGAAGAGTTCTGCGACTTGTTTGTTTGTAGCTGTTAAACGGCAGGTTTTTTGCTATGAAATTCACAGAACTAAACCTTTCCACAAAAAATTCAGTGAAATTCAGGCTCCAGGAACTGTTCAGTGGATGACAGTGTTCAAGGACAAGCTCTGTGTTGGCTACCAGTCTGGGTTCTCTCTGTTGACCATCCAGGGAGATGGACAATCTATAAACCTG
Seq A exon
GTAAATCCTAATGACCCCTCACTTATGTTCCTCTCACAGCAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAGTAATGAGGAGTACCTGCTTTGCTTCAGCCATATGGGAGTATACGTCGATTCGCAAGGTCGAAGGTCACGCATGCAGGAACTAATGTGGCCTGCAACTCCTGTTGCCTGTA
Seq C2 exon
GTTGCAATTCGTCGTACGTAACAGTGTACAGTGAATATGGTGTTGATGTATTTGATGTTAACACTATGGAATGGGTCCAGACTATTGGCCTGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-31-38,32-38-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.5=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCTAAAGAAGAGTTCTGCG
R:
ACTGTTACGTACGACGAATTGCA
Band lengths:
248-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]