GgaALTD0004586-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49818513-49821485:-
Coord C1 exon
chr5:49821347-49821485
Coord A exon
chr5:49821344-49821346
Coord C2 exon
chr5:49818513-49818610
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAGTATGT
5' ss Score
3.71
3' ss Seq
TTGTTCTTAAATCTATGCAGGTT
3' ss Score
8.34
Exon sequences
Seq C1 exon
TCTTTTGATGCCCTTTGTGCTGTGGAGCTCAGTAATGAGGAGTACCTGCTTTGCTTCAGCCATATGGGAGTATACGTCGATTCGCAAGGTCGAAGGTCACGCATGCAGGAACTAATGTGGCCTGCAACTCCTGTTGCCT
Seq A exon
GTA
Seq C2 exon
GTTGCAATTCGTCGTACGTAACAGTGTACAGTGAATATGGTGTTGATGTATTTGATGTTAACACTATGGAATGGGTCCAGACTATTGGCCTGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-48-54,49-54-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.5=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGTCGATTCGCAAGGTCG
R:
ACTGTTACGTACGACGAATTGCA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]