BtaALTD0004786-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69283460-69286495:-
Coord C1 exon
chr21:69286083-69286495
Coord A exon
NA
Coord C2 exon
chr21:69283460-69283557
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
CTCTGCTCCGTGTGCGCCAGGTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGATCGTCCGTGTGGCTGACTACAAGAAGGTGTACCAGATCGAGCTCGCCCCCAAAGAGAGAGTCGCCGTCCTCCTCTGCGGCCGGAACCACCACGTCCACCTCTGTCCGTGGTCCTCCTTCGATGGGGCCGAGAGCAACATGGACATCAAGCTTCCGGAGACAAAAGGCTGCCAGCTCATAGTGACCGGGACGCTGAAGAAGAGCGGCCCCACCTGCCTGTTTGTGGCAGTGAAGCGGCTGGTCCTTTGCTATGAGATCCAGAGAACTAAGCCTTTGCACAGGAAGCTCAGCGAGCTTGTGGCCCCTGGCAATGTGCAGTGGATGGCCGCAGTCAAGGACAGGCTCTGTGTTGGCTACCCTTCCGGGTTCTCTCTGTTGAGCACCCAGGGAGATGGGCAGGCTCTAAACCTG
Seq A exon
NA
Seq C2 exon
GTTGCAGCCCCACGCACGTCACGGTGTATAGCGAGTACGGCGTGGACGTCTTCGACGTGCGCACCATGGAGTGGGTGCAGACGGTCGGCTTGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-38-51,39-51-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.8=100)
A:
NA
C2:
PF0078017=CNH=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTGCCTGTTTGTGG
R:
CACGCCGTACTCGCTATACAC
Band lengths:
248-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development