Special

MmuALTD0002861-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112534591-112537893:-
Coord C1 exon
chr12:112537478-112537893
Coord A exon
NA
Coord C2 exon
chr12:112534591-112534688
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
GTCTGCTTCGTCTGCACCAGGTT
3' ss Score
7.54
Exon sequences
Seq C1 exon
TGATCGTCCGCGCTGCTGACTGCAAGAAGGTGTACCAGATCGAGCTGGCGCCCAAGGAGAAGATCGCCATCCTCCTGTGTGGCCGGAACCACCATGTGCACCTCTACCCCTGGTCCTCCTTCGACGGAGCAGAAGCGAGCAACTTTGACATCAAGCTCCCGGAAACAAAGGGCTGCCAGCTCATAGCGACAGGGACGCTGAGGAAGAGCTCGTCCACCTGCCTGTTTGTCGCTGTGAAGCGACTAATCCTTTGCTACGAGATCCAGAGAACTAAGCCTTTCCACAGGAAGTTCAGTGAGCTGGTGGCTCCGGGACACGTGCAGTGGATGGCCGTGTTCAAGGACAGGCTCTGTGTTGGCTACCCCTCTGGGTTCTCTCTGTTGAGCATCCAGGGGGACGGGCCGCCTCTCGACCTG
Seq A exon
NA
Seq C2 exon
GTTGCAGCCCCACCCATGTCACAGTGTACAGCGAATACGGGGTGGATGTCTTCGACGTGCGCACCATGGAGTGGGTTCAGACCATCGGCCTGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-32-40,33-40-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence exclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0078017=CNH=FE(74.9=100)

							
A:
NA

							
C2:
PF0078017=CNH=FE(12.0=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000042565f957A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000042565
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr14:103410410-103410411 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr21:69286083-69286495 
ALTERNATIVE
BtaALTD0004786-1/2
(CDC42BPB)
Chicken
(galGal4)
chr5:49821345-49821346 
LOW PSI
GgaALTD0004586-1/2
(CDC42BPB)
Chicken
(galGal3)
chr5:52426145-52426557 
LOW PSI
GgaALTD0004586-1/2
(CDC42BPB)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCCTGTTTGTCGCTGTGAAG

				
R: 
ATCCACCCCGTATTCGCTGTA

				
Band lengths: 
245-429

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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