HsaINT0032171 @ hg38
Intron Retention
Gene
ENSG00000062038 | CDH3
Description
cadherin 3 [Source:HGNC Symbol;Acc:HGNC:1762]
Coordinates
chr16:68687512-68691926:+
Coord C1 exon
chr16:68687512-68687736
Coord A exon
chr16:68687737-68691719
Coord C2 exon
chr16:68691720-68691926
Length
3983 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CAATGATCTGTTCACTCCAGGTG
3' ss Score
7.6
Exon sequences
Seq C1 exon
GAAGCCCTCCCACCACTGGCACGGGAACCCTTCTGCTAACACTGATTGATGTCAATGACCATGGCCCAGTCCCTGAGCCCCGTCAGATCACCATCTGCAACCAAAGCCCTGTGCGCCAGGTGCTGAACATCACGGACAAGGACCTGTCTCCCCACACCTCCCCTTTCCAGGCCCAGCTCACAGATGACTCAGACATCTACTGGACGGCAGAGGTCAACGAGGAAG
Seq A exon
GTACCTGAGTGAGTGGTGGTAGCGGGTGGGGTGCCAGCCCCACTGGTGGGCATCTGCCCCACACCAGGATTCTGCACACGTTCCTATCCTAGCATCTTGTGGGCCATGGGGACAATGATCTCCTCTAGAACCTCAATCAGATGCTATTTATTAACCTGGTGGAGGTCTTTGAAATTCCACAGGACCCCTAAAAGACCATTCTAGCCCAACCGCCTTCCTGTGTAGATGGAAAAACTGAGGCCTCGAGGAATCGAACCTATGTAGAGCATGTGAAGTGGACCTGGCACAGAGCATGCTCAGTGAGTGTTGGCTACGATCACTGTGCTGGGTCCTGACTCTCGCTATGTGACATGGGCCAAGTCACTCCCTCCCTCTCGAGGCCTCAGTTTTTCCATCTACACAGGAAGGCGGTTGGGCTAGAATGGTCTTTTAGGGGTCCTGTGGAATTCCAAAGACCTCCACCAGGTTAATAAATAGCATCTGATTGAGGTTCTAGAGGAGACCGTTGCCCCCGTGGCCCACAAGATGCCCACCACACCCGGCTGCGTTATGGCTTTAAAAATAATGTCATGGCCACACGCAGTGGCTTACACCTGTAATCCCAGCACTTTGGGAGCCTGAGGCGGGCGGGTCACCAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCATGTGCCCGTAGTCCCAGTTACTCAGGAGGCTGAGACAGAAGAATCGCTTGAAGCCGGGAGGCGGAAGTTGCAGTGAGCCGTGATTGTGCCACTGTACTCCAGCCTGGACAACAGAGTGAGACTGTCTCAAATAAAATAAAATTAAAATGTCACTAGGGTTTTTTGTTTTTGTTTTTGTTTTTGTTTTGAGACGGAGTCTCACTCTGTCTCCCAGACTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCCGCTTCCCGGGTTCAAGCAATTATCCCTGCCTGAGTAGCTGAGATTACAGATACCTGTCACCATGCCCATCTAATTTTTGTATTTTTTAGTAAAGGCATGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATCCTCTCGCCTTGGCCTTCCAAAGTGCTGAGATTACAAGCATGAGCCACCACACCTGGCCTATCAGGATTTTAATCTAGGCAGTCTCACTCACCATGGTGTGGAAAATAAAAAGCATAAGCATTATGGCCAAAACCCAGTGTTATTAATACCTGTAACAGTATTGATCAGTATTGATAACCTGGTTCTTGGCTTTAATTTCATTTTTCTGTTTGCCCTTGTTCTGTTGTCAGGGAAATTAATCTAGACTCTACTCCATGTGACCTCAGGCTAGTTACCTAACTCCCTAAGCCTCAATTTCTGCATTTGTAAAATGAGGATAACAGCAGTTCCCACCTCTTAAAGCAATGGTGAGGATCAGGGTAGGGCCTGGCACTTAGTAAGTGCCCATTTAGCCGGGCAAGGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGCGGATCACGAGGTCAAGAGGTCAAGACTGTCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATATAAAAAATAATTAGCCAGGCGTGGTAGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAAGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAGAAAAATTAAAAAAAAAAAAGAAAGAAAGAAAAAGTGCCCATTTAGTCACCACTGCCATCGTCATCAACAACTGAGAAATCAGCCTTATAGGATGGCAGAGATGTTTTAGTGACATATACCCCATGTTGGCCACTCCACATGGTCGACTAGTTGTTCAGACTGGAGAGCTGTCTCTGCCTCCTGGCACTAAATGGGGACAGAGTGGATTCTGCCTTCTGGCCCTTTGACTAAGAGGAGCCCAGCGAGAGTGCAGAGCATTTTAACTTGAAATCTGTGCTGAGATAGGCTGACAACCCGGGGAGGGGGTGGGGGTAGAAACGTGGGGGTTGTTTTTGATTGCCCCAGTGATTGGGGGCACTACGGGCATTTAGTGGTAGAAACCCGCAATGCTGTGGCAAATCCTGCATGATGAAAAAACTTCCACACAGGCTAACAGCTCCCTTCTTGAGAAAGTTGAGTCTAAACCAAAGGCCTTTCTTTAAAGAGGCCACTGATATTATGTTCGTCACCCACACACATAGCCCCTTCTCCACTCTGGGATTGCCACGCAGTCTCCCCCGAGTGGTGCCCAGTGTGCAGGCTGGGCTGGGCCTGGCTTCTGCTCTGTGGTTAGCCTGCCACCCCCTGGGCCTTGGAAGGCCAGTTAGCCCAATACCTGCTGCAGCCTCATTTCTGACATTCCTGCATTTGTGTGATCACTAATGCTGTGATAACACAGGTTAGCATCTGATCGGATCTGCTCAACATTAGCACTTACATAACCAAGTCATGTGCGTTTAGTTTTATTAATAATTGAATGCGGCCTGGCATTGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGGCAGATCACCTGAGGTCAGGAGCTTGAGACCAGCCTGACACAAAATCCACCTCTGCTAAAAATACAAAAACTAGCTGGGTGTAGTGGCGCAAACCTGTAGTCCCAGCTACTCCAGAGGCCAAGGCAGGAGAATCGCTTGAGCCCATGAGGCAGAGGTTGCAGTGAGCTGAGATCGCGCCACTGTACTCCAGCCTGAGTGATAGAGCAAGACTCTGTCTAAAAAAAAAATTGAAGGCCGGGCACCGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGAAGGTGGATCACGAGGTCAGGAGTTTGAGACCAGCCTGGTCAAGATGGTGAAAGCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATAGCTTGAACGTGGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCTCTCTAGTCTGGGTGACAGAGCAAGACTTAGTCTCAAAAAAATTGAATGCTCAGTTGGAAATATGGGTGTTTCATATAAGATTGGGCTAGCTATCAGCTGCTCTGTCTATGGAGTAGCCATTCTTTATTCCTTTACTTTCTTTTTTTTTTTTTTTGAGACAGTCCTGCTCTGTCGCCAGGCTGGAGTGCAGTGGCATGATCTCAGTTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACGTGCCATCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCCACTTCGGCCTCTCAAAGTGCCGGGATTGCAGGCATAAGCCACTGCGCCCAGCCCTCCTTTACTTTCTTAATAAAGTTGCTTTTACTTTAAAAAAAAAATGGGTTAGCTATCTTTTAGGAAGAATATTCTTTTTGAAGCAAAAAAACAGTGTAGCAGCCAATGATGCAAAGAAGTTATTGGTCCTGCATGACATGGCTTTTAAAACTTCATGTTATAAAAATACTGTGATTATTGATTTTTTTAAAAGTAAAATGACAAATTAATTTTTCTATCCCAATAATCCTTTTCATTATGGTGAATTTTGCTTTAGCCAAAGATCAGCTTTTACTGCTATTTTCCAAAGTGTGCTTGTGGAGTATTTCTCTGCATTGCCCACATGTGGAAGCCGTATTCTCAAACTTTCTTCATGGTGTACTCAGATCCCCGCACTGATGGTTCCCACAGCTAATCAATGATCTGTTCACTCCAG
Seq C2 exon
GTGACACAGTGGTCTTGTCCCTGAAGAAGTTCCTGAAGCAGGATACATATGACGTGCACCTTTCTCTGTCTGACCATGGCAACAAAGAGCAGCTGACGGTGATCAGGGCCACTGTGTGCGACTGCCATGGCCATGTCGAAACCTGCCCTGGACCCTGGAAGGGAGGTTTCATCCTCCCTGTGCTGGGGGCTGTCCTGGCTCTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062038:ENST00000264012:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(15.8=19.7),PF0002812=Cadherin=PU(54.5=63.2)
A:
NA
C2:
PF0002812=Cadherin=PD(44.3=55.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development