HsaINT0035584 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130943000-130948055:-
Coord C1 exon
chr9:130947826-130948055
Coord A exon
chr9:130943094-130947825
Coord C2 exon
chr9:130943000-130943093
Length
4732 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TAGTTTCTGAAAGGAAGCAGGAT
3' ss Score
-9.85
Exon sequences
Seq C1 exon
GTAACCTCCGAGGCTATGGCATGGCATCCCCAGGCCTCGCAGCCCCCAGCCTCACACCCCCACAACTGGCCACTCCAAATTTGCAACAGTTCTTTCCCCAGGCCACTCGCCAGTCCTTGCTGGGACCTCCTCCTGTTGGGGTCCCCATGAACCCTTCCCAGTTCAACCTTTCAGGACGGAACCCCCAGAAACAGGCCCGGACCTCCTCCTCTACCACCCCCAATCGAAAG
Seq A exon
GTGAGTGGTAGGTGGGGATGGGAGTGGGCGGGAGGGGACCCTGGGTGTCAGCCCCAGTGCCACCTGCTCTGGCTCAGTCTGGGCCTTCGGACAGGTCACACTCCCTTTATGCCTCAGTTTCCTCATCTGTAAAATGAGGGGGGCGGGAATGGACTTGTTTAGCGTTTCCCAAACTTCAAATATTCTTTTATCAACGAAGGGATTTTTGCCATGCCCAAACACTACCAGTACTATCATTTACTTAATGTTTCTTTTTTGTTTGTTTTTTGAGATGAAGTTTCGCTCTTATTGCCCAGGCTGAAGTACAATGGCGCGATCTCAGCTCACTGCAACCTCCGTCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAAAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCTTAATATTTCTTTTTAAATTATTGGTGTGGCCAAGCGTGGGGGCTCACACCTGTAATCCCAGTACTTTAGGAGGCCATGGTGGGTGGATCACCTGAGGTCAGAGGTTCGAAACCAGCCTGGCCAATATGGCAAAACCCCCTTCTCTACTAAAAATACAAAAAAGTAGCCGGGCATGGTGGTGCATGCCTGTAATCCTGGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATTGCGCCATTGCACTCCAGCCTGGGGAACAAGAGCAAAACTCTGTCTCAAAAAATAAATAAATAAAAATAAAATTATCAGGGCATGATAGTGCATGCCTGTAATCCCAGGGACTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTAGAGGCTGCAGTGAATTATGATCACACTACTGCACTCCAGCCTGGGTGACAAAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAATCAGCACTGCCCAGTAGAAATAAAATACAAGCCATATATGTAATTTAAAATTTTCTGGTAACCACATTATAAAGTAAAAAGAAATGGGCTAAATTAATATTACTAACTTATTTAACCCAATCCCATATGAAACTATTATCATTTCGACCTGTCATCAATATAAAAAATGAGGCATTTTACATTCCTTTTTTAAAAACTACAAAATCTTCACAATCTGGTGTGTATCTGATACTGACCTCTCAATTCAGCCCCGCCAGTTTCAGGTGCTCTCCTGAGGCTGTGGGGTGACTGTGTGGGAGAGCATGGCTTTGAATGAGTGAGCTTCCTTTCTGTTACATTTATTTGGAAAGGAAACATCATATCATAACCTGACATTCTAAAAACTATCTAAGTTAATTGCCATTCATAGAAGTATAAGAAATTGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGAGGGCAGATCATTTGAGGTCAGGAGTCCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCCCTAGTGGCGGGTGCCTGTAATTCCAGCTACTCAGGAAGGCTGAAGTAGGAGAATCACTTGAACCTGGAAGACAGAGGCTGCAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATTTCAAACAAACAAACAAACAAACAAACAAACAAACAAAAGTATAGGAAACATAACTAGGGTAGAACAATGCTATAAAATCCTAAGCTATACGCTGTTGCCGGCTATAGGTTCCAGCCCACAGCCCCCTGGCTCCTTGTGTGTTTGAGAGGTGTTTACCTTTCTCCTGGCATAAGCAGGAGATCTGCAAAGGGCTCACCCCCTCCCTAGACTGTCCTGTCCCTGAAGGTCTCCGCAGCTCCTGCTCACACCCTGCTTCTGGGTGTATTCCAGCGCAGGGGCAATGCCCCCTTTGCTGGCCACTCCAGGGCGGGCCACTTCTGGAGGTAAGGCATTTTCCTTCAGCGAGGGGCCCCGCCTCCAGCCTTCCAACGGGCCTGTCATCACAGATCTGGTCTAGTGTCTAACCCGCCCTGCCCTCATTTTTTTACGTATGGAAAAACCCAGGCTTAGAGATTGGGGTGCGGTTGGTCCTGCGCCCCACAGCTGTCTAGGTGGACCCAGAGCCCAGGCCTCCTGACTCTCAGGCTGGTGCCTGTTTCGTGCAGGGTGACAGCTAGGTAGTTTCTGAAGGGCAGAGTATGGATGTGTCCAGATTACCATTCCCTGCTCAGTGCTCATTCCTTGGGCTTAGCAGGAGGGAGGGAGGGAGGCTGCAGGCTTCTGGTGGCCTCCTGGGGTGCCTTGGACTGGCCAGAGAGAGCTGTGTGTTCATTTAGCAGACATCTGGAAGCCCCTGCAGGGGACTCCCTGGTGCAGATGATACATCTGGCCTGGCCCTCCCTGAGGTCTTGGACAGGAATGGGGAGGGTGGTGAGAGATATTAATGCAAATAATGCTCCAACCAATTAATTAAGACTGTGGAGGCCGGGTGCAATGACTCATGCCTGTAATCCCAGCACTATGGAAGGCCAAGGCAGGAGGATCAGTTGAGCCCAGGAGTTCGAGACTAGCCTAGGAAACACAGTGAGACCCTGGCTCTATGGAAGAAAAAAAAAAAGAATACAGAAATGCCACGAAAAGGAAGTAGGTTCTGGACCCATTCTGGAGTCTGGAGGGCTTCCTGCAAGAAGTGCTTCTGAGGCTCTAAGTGAAGGCCTAGGGGCAGGGACGGGCCTGGGGCTTGACCAGAGAGAAGGCCAAGGTAGATAAGCAGAGAGGGCTGGTTGCGGGGGCATGGCCGGGGCAGGTAGTGTGCAGAGGCCCGTTTGTGCAGGGAAGGGGTGGGTGTGCAGAGTGTTTTCAGGCTTGGCGTAAGGCGTGCACCAGGGCTGCAGGAAGCCATGGGAGGGCTTTAAGCCTGGAAGAAGAGACATGATCAGCTTTGCATTTTAGAAGGACCCCACTGGGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATCTGAGGTCAGGAGTTTGAGACCTGTAGGGACCAGCCCCACAGGGTCGGTGCGTCTCTCCCTGTGTGCGGCGACGAGAGAGTGTAGAAATAAAGACACAAGACAGAGATAAGAGAAAAGGCAGCTGGGCCCGGGGGACCACTACCACCAATGCGCAGAGACTGGTAGTGGCCCCGAATGTCGGGCTGCGCTGTTATTTATTGGATACAAGGCAGAAGGGGCAGGGTAAAGAATGTGAGTCACCTCCAATGATAGGTAAGGTCACGTGGGTCACGTGTCCACTGGACAGGGGGCCCTTCCCTGCCTGGCAGCCGAGGCAGAGAGGGAGAGGAGACAAAGAGAAAGACAGCTTACGCCATTATTTCTGCATATCAGGGACTATTAGTATTTTCACTAATTGACTACTACTATCTGGAAGGCAGAGCCAGGTGTACAGGATGGAACATGAAGGCAGACTAGGAGCGTGACCACTGAAGCACAGCATCACAGGGAGACGGTTAGGCCTCCTGATAACTGCGGGCAAGCCTGACTGATGTCAGGCCCTCCACAAGAGGTGGAGGAGCAGAGTCTTCTCTAAACTCCCTCGGGGAAAGGGAGACCCCCCCCCCCCCCCCGCCTTTCCTGGTCTGCTAAGTAGCGGGTGTTGTTCCTTGACGCCTTTTGCTACTGCTGGACCATGATCCGCCTGGTAACGGGCGTCTTCCCAGACGCTGGCGTCACCGCTAGACCAAGGAGCCCTCTGGTGGCCCTGCCCAGGCATAACAGAAGGCTCACGCTCTTGTCTTCTGGTCACTTCTCACTATGTCCCCTCAGCTCCTATCTCTGTATGGCCTGGTTTTTCCTAGGCTATGATTATTGAGTGAGGATTATCATAATATTGGAATAAAAAGTAATTGCTACCAACTAATGATTAATGATACTCATATATAATCATATCTAAGATCTATATCTGGTATAACAATTCTTGTTTTATATTTTATTATACTGGAACAGCTCGTGTCCTCTGTCTCTTGCCTCGGTGCCTGGGTGGCTTGCCACCCACAGATACCAGCGTGGCCAACATAGTGAAACCCCAACTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGTGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGGGATTGTGCTATTGCACTCCAGCCTAGGCCACAAGACTGAAATTCTGTCTCAAAAAAAAAAAGGACCCCACTGGCTACTTCATGTAAAACTGGGTGGGAAGTCAGGTCAGGAGGTAGCACTGTGGCCAGGAGAAGGCTTTGTGTCCTCCAAACCTGGGTTTATTTAACAGACAACTAGGTAGAATCCCCTAGACACCATGGTTGGGACATTTTTACTAAGATCATCCACTCGGCAACTCTGGGGCCAGGCCCACCAGAGGTCCTCAGGGCCCTGTCATCCCCTGGAGGATGGGGGGCAGCTGCCCTTGGGCAAGGGGGTATTGATAGGGGTGGGTATTGGATGTCAACATAGTTTCTGAAAGGAAGCAG
Seq C2 exon
GATTCTTCTTCTCAGACAATGCCTGTGGAAGACAAGTCAGACCCCCCAGAGGGGTCTGAGGAAGCCGCAGAGCCCCGGATGGACACACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131015:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)