BtaINT0038726 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98816413-98819360:-
Coord C1 exon
chr11:98819125-98819360
Coord A exon
chr11:98816507-98819124
Coord C2 exon
chr11:98816413-98816506
Length
2618 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGGTTTCTGAAAGGAAGTAGGAT
3' ss Score
-8.12
Exon sequences
Seq C1 exon
CCACAGGTAACCTCCGTGGCTACAACCTGGCCACCCCCAACCTGACACCCCCCAGCCTCACACCTCCACAGCTGGCCACCCCAAATCTCCAGCAATTCTTTCCTCAGGCCACTCGGCAGTCCCTGCTGGGTCCTCCTCCCGTTGGGGTCCCCATCAACCCCTCCCAGCTCAACCTTTCAGGGCGAACCCCCCAGAAACAGACTCGGACCTCCTCCTCTACGACCCCCAATCGCAAG
Seq A exon
GTGAGTGGTGTCTGGGTGCAGAGCAGGTGTGGATGGGAGAGGACACATCTGGGGACCCACCAGCAGTACCCCCTCCAGCTCACACTGGCCTTGGGGCTGATCATAGCCCTCTCTGTGCCTCAGTTTCCTTATCAGTAAAATGATAGGAGAGAGAGTTAGACTTGTCTAGTGTTTCTAAAACTTTAAATATTTCTGAACCCCAAAGTGATTTTTGCTATATCCGAACACCACTCAAACTATTTATTCCCTTTTTATTTACCATTTCTATTATTTACTAATACTATTTGCTAACAATTCTCTCTTTTTGAAAAGACTGAGGTGTAATTGACATATAATACTGTATTCGTTGTAGGTATATTTTACCAACTTTCTTTAAATCAGCACTGCCCAGTGGAAATTAAATGTGAGCCACACATGTAATTTAAAAATTTCTGTATCCTGCATCGAACCTGGACTGGCGATTTGTTTCTTATATGATATTATATATGTTTCAAAAGTAATTAGCTCCAGTTAATATAAATAAATTTAAATTTTAAAAAAAATTAAAAAAGTAAAAATTTCTGGTAATCACAGTAACAAAGTAAAAAGAAACAGGCAAAATTAATTTTACTCACATATTGTATTTAACCTAATATATTAAAAATGATCATTTCAACATGTAATCGATATAAAAAATGATTATTTTTTTAATACTAATTCTTTAAAACTGGTATATATTTTATGCTTACATTTCGACTCAGCTTGCCGCAATTCCAGTGCTTGAAAGTCAGGCACATGTGCCTGCTGGCTACTGTCTGGGGTAGTATAGCTTTAAATGAACACTGCTTTTCTGTTACATTTATTTAAAAAAGAAACAATCACTATCTGAAAATTTTTTTTAAAAAAGCAACACAGTAACAGTAACTCTGAATAAATCCCCAAGCATAGAAGTAAAAGAAAAGTTACTGGGGTAAAATAATGTTATAAAATCCTAAACTCTACCCGGTTGCCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGAAGGCTGCAGTCCGTGGGGTTGCGAAGAGTCGGACACGACTGAGCAACTTCACTTTCACTTTGCACTTTCATGCATTGGAGAAGGAACTGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGAGCCTGGTGGGCTGCTGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAGCAACCCTGTTGCCAGCTGAAGTTTCTGAACCTTTAGTGAGCTCTCCCTGACTTGAGCAGGAAGAACCAGGGAGGTTTTCAAAGGAAATAATATGCTCCCTATGTCTGTCCTGTCCCCGGATGTCCAGACAGCTCCTCACACACACCACATTCCTGAGAGTACCCCAATTGGGAGAGGGGGCAGCACCCACCTTTTCTGGCTCTGACACCACCCACATCCAGAGGTGAGGCATTTCCCTCCAGAGAGGGGTCACAGCCTCTGACCTTCCAGTTGAGCCTGTCCTAACATGGCCCTCTCTAGTGTTTACCTTCTTGCCCCATTTTACATATGGGAAGACAGAGGCTCAGAAAGGAGGGTGGAGATTGTCCTGGGCTGCAGAGCTGTCCAGGCAGACCAAGAGTCCGGCCCTCCTGACTCTCAGACCAGTGCCTGTGTCATGCAGGGTGAGCTGGGTAGTTTCCGAAGGGCATGGAGCCCTGAAGTGGTGCATGTTTCCACTCACTGCTGGTCCCTTGGGCTTAGTAGGAGAGAGGGAAGCGGCAGATGGACCCCTGGGGCTCCCTGGGGTACCCTGGAGCCATCCGGAACCGTGTTCACTTAGCAGATGTCTGTTAAGGCCTGGCAGAGGACTCTCTGGGGCAAGAAGGCATCTGGCCCGGCTCTCCTGGAGATCCTGGGCTGGGAGGAGGTTGGTAGTGATGACAGGACCTCAATATACATAATTCTCCAGCTGATGAATGATGGCCGTGGGAAATTCCACAAAAAGGAAGTCCAAGGCCCCGGGGAGCCTGTACTGTGGGTTAGGAGGGCTTCCTGCAAGAAGCGCCTTTGAGGCCCTGGGAGAAGATCCAGGGCTTTGGGGAGCCAGAGAGGCCACCGTGGACACAGAGAGGAGAGGGGGCATGAGAGCTGAGGCTGGAGGAACAGGCCTGAGGTAGGGGCCAGACTGTGCAGGGGCCTGGGGAGGGGAGTTAGTTTCAGGCTTGGGGTAAGGAAGGAATAGTCCAGGGCTATGGGAAGTCATGGCAGGATCTCAGCCTGAAAGAGACAAGAGGCACGATCAGGTCTGCATTTGAGAAGGGTCCTTCTGGCTGCTTCGTGAAGAAGGTAAGGAATCAGGGGGCAGCATCATGGACCTGGAGGAAGTATTGCGTCGCCCAAACCTGCATTTACTTAACAGGCTGGCAGCTAGATGGAACTCCTGGACGTGATTCCCGGGGTGTTGAGGGTCTTCCCTTGGCAGCTCTGGGGCCAGGCTCCTTCATCCCCTGGAGCCTACATGTTGGAGCTGCTCTTGAGCAAGGGGGTATTTACTGGGGTGGGTGGCAGATATCAGAAATGGTTTCTGAAAGGAAGTAG
Seq C2 exon
GATTCTTCTTCTCAGACGACGCCTGTGGAGGACAAATCGGACCCCCCAGAGGGGTCTGAAGAAGCCGCAGAGCCCCGAACAGAAACACCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development