RnoINT0036643 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11396070-11399471:+
Coord C1 exon
chr3:11396070-11396393
Coord A exon
chr3:11396394-11399377
Coord C2 exon
chr3:11399378-11399471
Length
2984 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGGTTTCTAAAAGGAAGCAGGAT
3' ss Score
-7.7
Exon sequences
Seq C1 exon
CTGACATCCCCATGGTATTTGGGGGACTGAACCCCTGATAGGATCTTGGCCATTCAACCACGGTGTGACTTCTCGTCTCATCTCTTCTCCACAGGCAACCTCCGTGCTTACAATGTGACAGCCCCAAACCTAGCAGCTCCTAGCCTTACACCACCCCAGATGGTCACCCCAAATCTGCAGCAGTTCTTTCCCCAGGCTACTCGACAGTCCCTGCTGGGGCCTCCTCCTGTTGGGATCCCAATAAACCCTTCTCAGCATAACCACTCAGGGAGGAACTCCCAGAAGCAGCCCAGAACCCCCTCTTCCACCACCCCCAATCACAAG
Seq A exon
GTGAGTAGAGCAGCTGCAGTAGGAGTGGGTGAAGGGGTCCCCAGTGTCAGCCCAGCTCTCTGTGCTTGGGCTCGCCCTGGCCTTTGGTTTTTTTGCCTCAGTGTCTGTAAAGCAAAGGTGTCTAGTATCTGTCATCTTCTGTCAGGTGTCGTTCGTCCTTGATGTGACTTCAGCCCTACCCAAATACCACCTTATTATTATCTATGTGCTATTCCTCTCTTAAACAAGTTTCTTTCCTTCTTATCATCATTTTGTTTTTGCGTGTGCACGGGGAAGTCAGATCACCTCCCTCCTACCACATGGGTCCTAGGGACAGAACTTGGCGCCAGATGCCTTCACCTGCTGAACCAGCTCAGTGGCCCTCAGTGCTGTCTCTCTTCACGTCAGCAATGTCTAGTAGAACTAGAACAAGTCGTATATCTGATTTAAACTTTTGGATAGCCATATAAGAAGGTAAAAAGGTCAGGGTATAAGGACTACCCTTCATAATCCCAAAACTTGAGAGGTTAGGGGCAGAAGACACGGCACATTCTAGAACATCCTGAGCTGAGTGGAAAGACCTTCAGGTTTTAGAAATAAAAAGAACAAATGAAGTAAATCTTTTTTTTTTTAAAGAGCTATCTATTTATTTTATGTACATGAGTACACTATAGCTGTCTTCGGACACACCAGAAGAGGATATCAGTTTCCATTACAAGATGACTGAGCCACTGTGTGGTTGCTGAGAATTGAACTCAGGACCTCTAGAAGAGCTGTCAGTGCTCTTAAACAGCTGAGCCATCTCTCCAGTCCTGGATGAAGTTAATCTTACTGTCAGGTAGAATCAAGTACACTTAGAATCCCAGCACTCTGGAGATGGTTCAGGAGGCTCAGAGATCTAAGGTCTTCCTCAGTTACATAGTGAGTTCTAGGCCAGCCATCCCAAAACATGCCTTTAATCCCAGCACTTGGAAAGCAGAGGCAGGCGGAGCTCTGAGTTAGAGGCTAGCCTGGTCTACAGAGTGAGTTCTAGGAGTGGACAATTAGGGCTACTCGGAGAAACCGTGTCTTGAAAATACCAATCAACCAATAAATCAATTAATCAATAAGATTTCTGATACCCTCCTTTGCTTGATGATTAATGTTCGTTAGTTAAGAGACAAGGTCGTATCTCCCAAATTTCAAATACCTTCTATGCCCCTACGTTGCCCAGCCTGGTCGCAAACTTCTCAGTTCAAGTGATCCTCCTGCCTCAGCCTCTCAAGTTCACATATATTTTATCATGCCCCATTTTGTCCTTAGAAAACAAAACAAAAAAAAGCCCACTAAATCTAATCTGTGATTTAATATCGTAATAACACTTCACTGTCTTCTGTGTTGCTTAATCTCCCGCCTTAATCGAGATTCCGTGCTTCAAGTGTTTACCTGAGGCTAATGGTGACTCTGTGGGACAGGCAGCTTTGAATGTTACTTTTAAGGCACAAGGCTATGGCTTGTGGTATCCACAGGCTTGGGATCCCTGAGGCTCTGGGTTCTGCAGAAAATAAGGAAGCATTGTATCACTGCCTAAAAGTTTCAAAAAATGTGTACTTCTCATCCACAGAAGAAAAGCAGAGTGCTAGGGGGGTTACAGGTTACAGCTGCATCTAAGAACCCCAGCATGTACACACACACACTCTGTCCCTGCATGTCTGCATAAGGGTCCACTCCCAAGCTTATCTAGGGCAGGAACCATGTTCTTTACTTAATCAGTTTCTCCTACATCTTTAGGAAGGCATTTCCCTCCAGAGAAGGGCTCAGTCTCTACCCTTAGGGTTAGGATTAGGCCTGGCCCGCTGGGTTCTTGGCCTACCTGTGCTCCTGTTTTACATATAGGGAAACTACAGCTAACAGACTGGAGTGGTCGAGGTAGGCACAGAACCCAAGCCCCCTGACTCCCTGTGTCTTCCAGGGCAAGAACTCGGTAGTGTCCGAGGGGCTGGGGCCTGATGTGGGGTACAGATGTGTATCCCACCAGGACAACAGGCCTTAGCAGTACACAGGGAAGCTATAGATGGCACCCAAGGGCTCCCCATAGTGCCCAAGAAGTGGCTGGAGCACTTTAAGGCTAAGATGTAGCATCCGTCCTTCTGTGGGTCTTTGGTGTGTACGTGTAAGAGATGTTAATACAGTAACCCAAAAGCAATGAATTAAATGAGACCCTGTCTCCCAACAAACACAGCAGCAAAACCCACGAAATATTACTAAAAGGGTCTAGACCTGGCCTGGGAAGGAGTTTCCTGCCAGAAGCTTTGAGGCTCTAGTTGAAGACTAGACACAGGAAGAGGCTGAGGGTGTGACCAGAGAAAGGCCAGTGATGATGCATGGAGACCGGTGGAAGGTGGGGTTCAGAAGGGAAAGAGAGGCAGCGGTTCAGGCCCTGAGAGTGGGAGGGGCGGACAGGTCCTGGCTTACGGTAAGGAAAGCCGTACCACCAGGAGGCCCAGGAGGGTCAGGCCAAAGGCTCTCTCTGGCTGACTGTGGGAAGTCTGGATGACTAGGAACCAAGAGACTTTCCGTATCTCCCCAGCAGGACCAAATAGCTTCAGATAACGACACTTGAGGGGCTCCAGGTCCTCTATGCTTCGTGCCTTCGGCCAGGCCCTGTTAGTCCCTTGAGATGGTGATGGCCATTCTTTTCCTCTCTCTGTTTTTCCGAGACAGACTTCTCTGTGCAGCCCCACAGTCGGGAACTTGCTCTGTGGCTGGGTGGCGACAGTCGTTTTGAGTAGGAGAGTATTTATTTGCAAGTGAGATAGAGGTTTAAAAAATGGTTTCTGAAGCTGGGCAGTGGTGGCGTGTACCTTTAATCCCAGTACTCAGAGGCAGAGACAGGTAGGTCTCTGAGTTAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTTGAACAACACCCCCACCCCACCCCAAATGGTTTCTAAAAGGAAGCAG
Seq C2 exon
GATTCTTCTTCTCAGACGGTGCCTCTGGACGACAGGGAAGACCCCACAGAGGGGTCTGAGGAAGCCACAGAGCTCCAGATGGACACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]