RnoALTA0009053-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11396164-11399471:+
Coord C1 exon
chr3:11396164-11396393
Coord A exon
chr3:11399393-11399412
Coord C2 exon
chr3:11399413-11399471
Length
20 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGCAGGATTCTTCTTCTCAGACG
3' ss Score
3.24
Exon sequences
Seq C1 exon
GCAACCTCCGTGCTTACAATGTGACAGCCCCAAACCTAGCAGCTCCTAGCCTTACACCACCCCAGATGGTCACCCCAAATCTGCAGCAGTTCTTTCCCCAGGCTACTCGACAGTCCCTGCTGGGGCCTCCTCCTGTTGGGATCCCAATAAACCCTTCTCAGCATAACCACTCAGGGAGGAACTCCCAGAAGCAGCCCAGAACCCCCTCTTCCACCACCCCCAATCACAAG
Seq A exon
ACGGTGCCTCTGGACGACAG
Seq C2 exon
GGAAGACCCCACAGAGGGGTCTGAGGAAGCCACAGAGCTCCAGATGGACACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-6-10,6-9,6-8,6-7-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAACCACTCAGGGAGGA
R:
CATCTGGAGCTCTGTGGCTTC
Band lengths:
117-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]