HsaINT1007743 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128180721-128185776:-
Coord C1 exon
chr9:128185547-128185776
Coord A exon
chr9:128180815-128185546
Coord C2 exon
chr9:128180721-128180814
Length
4732 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TAGTTTCTGAAAGGAAGCAGGAT
3' ss Score
-9.85
Exon sequences
Seq C1 exon
GTAACCTCCGAGGCTATGGCATGGCATCCCCAGGCCTCGCAGCCCCCAGCCTCACACCCCCACAACTGGCCACTCCAAATTTGCAACAGTTCTTTCCCCAGGCCACTCGCCAGTCCTTGCTGGGACCTCCTCCTGTTGGGGTCCCCATGAACCCTTCCCAGTTCAACCTTTCAGGACGGAACCCCCAGAAACAGGCCCGGACCTCCTCCTCTACCACCCCCAATCGAAAG
Seq A exon
GTGAGTGGTAGGTGGGGATGGGAGTGGGCGGGAGGGGACCCTGGGTGTCAGCCCCAGTGCCACCTGCTCTGGCTCAGTCTGGGCCTTCGGACAGGTCACACTCCCTTTATGCCTCAGTTTCCTCATCTGTAAAATGAGGGGGGCGGGAATGGACTTGTTTAGCGTTTCCCAAACTTCAAATATTCTTTTATCAACGAAGGGATTTTTGCCATGCCCAAACACTACCAGTACTATCATTTACTTAATGTTTCTTTTTTGTTTGTTTTTTGAGATGAAGTTTCGCTCTTATTGCCCAGGCTGAAGTACAATGGCGCGATCTCAGCTCACTGCAACCTCCGTCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAAAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCTTAATATTTCTTTTTAAATTATTGGTGTGGCCAAGCGTGGGGGCTCACACCTGTAATCCCAGTACTTTAGGAGGCCATGGTGGGTGGATCACCTGAGGTCAGAGGTTCGAAACCAGCCTGGCCAATATGGCAAAACCCCCTTCTCTACTAAAAATACAAAAAAGTAGCCGGGCATGGTGGTGCATGCCTGTAATCCTGGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATTGCGCCATTGCACTCCAGCCTGGGGAACAAGAGCAAAACTCTGTCTCAAAAAATAAATAAATAAAAATAAAATTATCAGGGCATGATAGTGCATGCCTGTAATCCCAGGGACTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTAGAGGCTGCAGTGAATTATGATCACACTACTGCACTCCAGCCTGGGTGACAAAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAATCAGCACTGCCCAGTAGAAATAAAATACAAGCCATATATGTAATTTAAAATTTTCTGGTAACCACATTATAAAGTAAAAAGAAATGGGCTAAATTAATATTACTAACTTATTTAACCCAATCCCATATGAAACTATTATCATTTCGACCTGTCATCAATATAAAAAATGAGGCATTTTACATTCCTTTTTTAAAAACTACAAAATCTTCACAATCTGGTGTGTATCTGATACTGACCTCTCAATTCAGCCCCGCCAGTTTCAGGTGCTCTCCTGAGGCTGTGGGGTGACTGTGTGGGAGAGCATGGCTTTGAATGAGTGAGCTTCCTTTCTGTTACATTTATTTGGAAAGGAAACATCATATCATAACCTGACATTCTAAAAACTATCTAAGTTAATTGCCATTCATAGAAGTATAAGAAATTGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGAGGGCAGATCATTTGAGGTCAGGAGTCCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCCCTAGTGGCGGGTGCCTGTAATTCCAGCTACTCAGGAAGGCTGAAGTAGGAGAATCACTTGAACCTGGAAGACAGAGGCTGCAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATTTCAAACAAACAAACAAACAAACAAACAAACAAACAAAAGTATAGGAAACATAACTAGGGTAGAACAATGCTATAAAATCCTAAGCTATACGCTGTTGCCGGCTATAGGTTCCAGCCCACAGCCCCCTGGCTCCTTGTGTGTTTGAGAGGTGTTTACCTTTCTCCTGGCATAAGCAGGAGATCTGCAAAGGGCTCACCCCCTCCCTAGACTGTCCTGTCCCTGAAGGTCTCCGCAGCTCCTGCTCACACCCTGCTTCTGGGTGTATTCCAGCGCAGGGGCAATGCCCCCTTTGCTGGCCACTCCAGGGCGGGCCACTTCTGGAGGTAAGGCATTTTCCTTCAGCGAGGGGCCCCGCCTCCAGCCTTCCAACGGGCCTGTCATCACAGATCTGGTCTAGTGTCTAACCCGCCCTGCCCTCATTTTTTTACGTATGGAAAAACCCAGGCTTAGAGATTGGGGTGCGGTTGGTCCTGCGCCCCACAGCTGTCTAGGTGGACCCAGAGCCCAGGCCTCCTGACTCTCAGGCTGGTGCCTGTTTCGTGCAGGGTGACAGCTAGGTAGTTTCTGAAGGGCAGAGTATGGATGTGTCCAGATTACCATTCCCTGCTCAGTGCTCATTCCTTGGGCTTAGCAGGAGGGAGGGAGGGAGGCTGCAGGCTTCTGGTGGCCTCCTGGGGTGCCTTGGACTGGCCAGAGAGAGCTGTGTGTTCATTTAGCAGACATCTGGAAGCCCCTGCAGGGGACTCCCTGGTGCAGATGATACATCTGGCCTGGCCCTCCCTGAGGTCTTGGACAGGAATGGGGAGGGTGGTGAGAGATATTAATGCAAATAATGCTCCAACCAATTAATTAAGACTGTGGAGGCCGGGTGCAATGACTCATGCCTGTAATCCCAGCACTATGGAAGGCCAAGGCAGGAGGATCAGTTGAGCCCAGGAGTTCGAGACTAGCCTAGGAAACACAGTGAGACCCTGGCTCTATGGAAGAAAAAAAAAAAGAATACAGAAATGCCACGAAAAGGAAGTAGGTTCTGGACCCATTCTGGAGTCTGGAGGGCTTCCTGCAAGAAGTGCTTCTGAGGCTCTAAGTGAAGGCCTAGGGGCAGGGACGGGCCTGGGGCTTGACCAGAGAGAAGGCCAAGGTAGATAAGCAGAGAGGGCTGGTTGCGGGGGCATGGCCGGGGCAGGTAGTGTGCAGAGGCCCGTTTGTGCAGGGAAGGGGTGGGTGTGCAGAGTGTTTTCAGGCTTGGCGTAAGGCGTGCACCAGGGCTGCAGGAAGCCATGGGAGGGCTTTAAGCCTGGAAGAAGAGACATGATCAGCTTTGCATTTTAGAAGGACCCCACTGGGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATCTGAGGTCAGGAGTTTGAGACCTGTAGGGACCAGCCCCACAGGGTCGGTGCGTCTCTCCCTGTGTGCGGCGACGAGAGAGTGTAGAAATAAAGACACAAGACAGAGATAAGAGAAAAGGCAGCTGGGCCCGGGGGACCACTACCACCAATGCGCAGAGACTGGTAGTGGCCCCGAATGTCGGGCTGCGCTGTTATTTATTGGATACAAGGCAGAAGGGGCAGGGTAAAGAATGTGAGTCACCTCCAATGATAGGTAAGGTCACGTGGGTCACGTGTCCACTGGACAGGGGGCCCTTCCCTGCCTGGCAGCCGAGGCAGAGAGGGAGAGGAGACAAAGAGAAAGACAGCTTACGCCATTATTTCTGCATATCAGGGACTATTAGTATTTTCACTAATTGACTACTACTATCTGGAAGGCAGAGCCAGGTGTACAGGATGGAACATGAAGGCAGACTAGGAGCGTGACCACTGAAGCACAGCATCACAGGGAGACGGTTAGGCCTCCTGATAACTGCGGGCAAGCCTGACTGATGTCAGGCCCTCCACAAGAGGTGGAGGAGCAGAGTCTTCTCTAAACTCCCTCGGGGAAAGGGAGACCCCCCCCCCCCCCCCGCCTTTCCTGGTCTGCTAAGTAGCGGGTGTTGTTCCTTGACGCCTTTTGCTACTGCTGGACCATGATCCGCCTGGTAACGGGCGTCTTCCCAGACGCTGGCGTCACCGCTAGACCAAGGAGCCCTCTGGTGGCCCTGCCCAGGCATAACAGAAGGCTCACGCTCTTGTCTTCTGGTCACTTCTCACTATGTCCCCTCAGCTCCTATCTCTGTATGGCCTGGTTTTTCCTAGGCTATGATTATTGAGTGAGGATTATCATAATATTGGAATAAAAAGTAATTGCTACCAACTAATGATTAATGATACTCATATATAATCATATCTAAGATCTATATCTGGTATAACAATTCTTGTTTTATATTTTATTATACTGGAACAGCTCGTGTCCTCTGTCTCTTGCCTCGGTGCCTGGGTGGCTTGCCACCCACAGATACCAGCGTGGCCAACATAGTGAAACCCCAACTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGTGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGGGATTGTGCTATTGCACTCCAGCCTAGGCCACAAGACTGAAATTCTGTCTCAAAAAAAAAAAGGACCCCACTGGCTACTTCATGTAAAACTGGGTGGGAAGTCAGGTCAGGAGGTAGCACTGTGGCCAGGAGAAGGCTTTGTGTCCTCCAAACCTGGGTTTATTTAACAGACAACTAGGTAGAATCCCCTAGACACCATGGTTGGGACATTTTTACTAAGATCATCCACTCGGCAACTCTGGGGCCAGGCCCACCAGAGGTCCTCAGGGCCCTGTCATCCCCTGGAGGATGGGGGGCAGCTGCCCTTGGGCAAGGGGGTATTGATAGGGGTGGGTATTGGATGTCAACATAGTTTCTGAAAGGAAGCAG
Seq C2 exon
GATTCTTCTTCTCAGACAATGCCTGTGGAAGACAAGTCAGACCCCCCAGAGGGGTCTGAGGAAGCCGCAGAGCCCCGGATGGACACACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.998 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains