HsaINT0035588 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130952967-130953868:-
Coord C1 exon
chr9:130953711-130953868
Coord A exon
chr9:130953142-130953710
Coord C2 exon
chr9:130952967-130953141
Length
569 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
ACTCTGCTTTCTGCCCCTAGCCA
3' ss Score
9.45
Exon sequences
Seq C1 exon
CCCGCCCGCATTTGGGCCTTACGAGCCCACAGGCCCCGGAGTAGCAGCGGGGAGGCCGGGAGCCCGCGGGCCGGAGCCGCCCGGCCGAGGCGTGGGGGCTGCGGGGCCGGCCCATCCGTGGGGGCGACTTGAGCGTTGAGGGCGCGCGGGGAGGCGAG
Seq A exon
GTGCGGGGCCGGGGGCGGCTGGGTCGTGGGGCTCCGCCTGCGAGCTGGCTGTGTCTGCGGAGGAGGCGGCTGGCGGGGTGGGAGCGGGCGGAGTGGGGCGCGAGGAGGTGGCGGTGGTGGAGAGAAGCCGTCCCACGGAGCTCAGGACCACGGTGACCGGGTTGGACGGGTGCCGATGTTATTGACACCCGGGGGCCCAGAGAGGGTTGCGGTATTGAAAAGGGGCTGTGAGTGAGGAAGTGATGGGCGCAGAGAGAGGCTGAGGCTGAGGGTGGGAGGATGGAGCCGCCAGAAATGGAGAGATGGAGGGACTTGAAGGAGGGGCTGTTGGCAGTGTCTGGGGGGCATTGGCAGGAGGGTGGTTGAATCTTGCCCCTAGCAGGACTGGAGGTAACTTGGAAGGATGGGCCAAGCGAGTGTGGCAGGCTCTTGGCAGGACTGGGAATGCAGCTGTGAAGCTCCTCAGCAGTCTCTGCGGGCTGTGGCTGCGGGGAGTGGCGGTGGATGGGAGGGGAGCAGGCCTGACTTATGGTGGGGACCCCTTGCCTCACTCTGCTTTCTGCCCCTAG
Seq C2 exon
CCACCATGTTCAGCCAGCAGCAGCAGCAGCAGCTCCAGCAACAGCAGCAGCAGCTCCAGCAGTTACAGCAGCAGCAGCTCCAGCAGCAGCAATTGCAGCAGCAGCAGTTACTGCAGCTCCAGCAGCTGCTCCAGCAGTCCCCACCACAGGCCCCGTTGCCCATGGCTGTCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131016:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.243
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATTTGGGCCTTACGAG
R:
CCTGTGGTGGGGACTGCT
Band lengths:
303-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)