MmuINT0036587 @ mm10
Intron Retention
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32363198-32363979:+
Coord C1 exon
chr2:32363198-32363656
Coord A exon
chr2:32363657-32363804
Coord C2 exon
chr2:32363805-32363979
Length
148 bp
Sequences
Splice sites
5' ss Seq
CGGGTATAA
5' ss Score
3.12
3' ss Seq
ACCCACCATACCCCCTTCAGCCA
3' ss Score
4.64
Exon sequences
Seq C1 exon
AGTGGAGGAGGGTTGGGCACCCCGGGAAGGGTGGACCGCAGGGATAGCGGCTACTTGCAGAGAGCCTACGGGCTTTGTGGACAGGCGAGGCCACAGGATTAGTTAAGTGGCGTTGGCTATATCTGCGAGGGAAGGGAGTGGAGGGATGAGGGACAACGGAGCGGGGTGGGGGTGTGCTGCGGCGGACGGAAGCGTTTCCCATCCAGGGTTCATGGATTTAAGTGACACAATTTAGGGAGAGGACAGCGGAATCCAAAACAGGGAAGTGTGCACGGGAAGCACCAGGAAGTGTAGAGTGACTGACAGGCAGGAGATGGGAGTGGAAAGGTGTGCTCCGATTAGAAGGTTGGACCGCCAGAGTTGAAGAGATGGGAGGGAAGATAAAGAACTGAAGGCGTGTCTGTGTGTGTATCCTGTTCTGGCAGCTGACCGGAAGAACTGGAAGCCCCGAAGCCCCGG
Seq A exon
GTATAAATGCAGCGTGCTCTTGGCGTGGGTGGGACTGTGTAGCGGTGAAGCTTAGCAGGCGTTATGCTGGGGTGGGTGTTTTGGGAGGGGAGAGAAGCTGGATCATCCCAAAGTGGTGATCTGACCCTACCCACCATACCCCCTTCAG
Seq C2 exon
CCACCATGTTCAACCCGCAACTCCAGCAGCAGCAACAGTTGCAGCAGCAGCAGCAACAGTTGCAGCAGCAGCTCCAGCAGCAGCAGCTCCAGCAGCAGCAACAGCAGATACTGCAGCTCCAACAGCTGCTGCAACAGTCCCCACCACAGGCCTCCTTGTCCATTCCTGTCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205:ENSMUST00000113332:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGAAGGCGTGTCTGTGTG
R:
GGCTGACAGGAATGGACAAGG
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types