HsaINT0035746 @ hg19
Intron Retention
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122135075-122139900:-
Coord C1 exon
chr2:122139784-122139900
Coord A exon
chr2:122135226-122139783
Coord C2 exon
chr2:122135075-122135225
Length
4558 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AAAATATTTTTTATCTTTAGCAT
3' ss Score
7.24
Exon sequences
Seq C1 exon
TCGGTTATGGGGTTGGAGTGCCGACGGGTTAGCGAAGCACCCACCTCCCTTTTCTCAGCCTAACTCCATCCCCACCGCTCCCTCCCACAAGGCTCTCAGGCGCTCTTACTCTCCCAG
Seq A exon
GTAACAAGCTACCTGTCAAACTTGTCTGAGGTGTCACAATATTATTGCATTTCCAAGGTCGTCTCAGGTCTTTGGGAAAGCCTCTAAGCTGCCTCCAGTGTGGTCCCTTCCTTGGTGTCACATAGCAGGAGTAGAGCCTTGGTGAGAAGTGTGAGCAGGTGTGTGATCTTTGCCAAATCTCACAAGTATGGTTCCTGCTGTGTCACAGGGACAGATGACCCTTTATAAGCTGATCAGATTCATCACCACCTATTATTGTGGGCCTTTCTGTACAGTGCAGTGCTCAGCCCCCAGAAAGACCTCAGGAAATGCTGTGAGGTCAGCGTGGGCAATAGTGGGAGCAGTTTCCTTAGCATGCGTCTAAAGTGCAGAAGACATTCCCCTGAGAAGCCAAAAAGACCTCTTTCCCAAACCATACCTGTCACTCTCAGCCTTGCTATTGACTATTTGTAACTGATTTCTTTCCTAACATACTGTCATATGAGGGTAGTCTGAGCACACAGATCCAGAAAGGAGTCCCCAAGAGGCAGGATAACTGTTACAGCTCACTAAGGATGCCCTGCCTCTAAGAAGGAGAAACGTCAGTCCCTTCACGCACCCCCACAGTTGATGCTGAATGCGGCATCATGGACACTGGTTATGCAACAATGTTATGAGTCTGGAAGAAGGGGTGGGCTTCCCTCAGATGCTGAATCTGTGGTACAAAGAAGGGTCCACATAGTACTGCAGATGTCTATTTCAGGGTCTCTTGGGGATGCTTTTTATAAGGTCCAAAGATCAGAGAATCTCTTCCCTAGAAACCTGTTAGAGCACTGGGCAGTCCAGCTGTCACTGTTCTTTGTGAGATGAGTTTCTATCCTCTATAATAGAGGGTGTGATAGGAAAAGGGTTAAAAAAAAAAAAGACCTGTTACTTTTGAAATACTTCATAGATAGCTTTTGTGCAGATTTGCATTCTGACTTTTGTGGAATACAAATAATCTACATAGTGAAGCCAAAAACAGTAAATGAAATATTTTAACAACACCTTCCTTTTGAAGCTCTTATACCTCTAAAAGTCATTTCTAAAATGTACAGAGAACCCTGCGATGAATGTTTCTAGATACACAAGGTTAGGGCAAGCAGGCGAGGAGACGGCTGCTGTCTTTAATGTTAACAAAGCAGGTCACTCCTTTTTCTTTTTTTTAAGGTTAGCTGTGCCTCCAAGTGTAAGATCAGTTGGTTGACTATCTCCCAGTATGTTGACCTGTATTCCCTCATGGGCACTCAGCTTCACCACCAGCCAGCCATCAAGATTGCCCCTCCAGAGCACATCCCATTCCTAGGATCATCTTTCACATACATACACGATACATATTGACCTAACTCATTAAGAGAGAATGCTTACTGAATACTTATAACTTCTGTTGCCCATTGGAGGCAGGGATAGTTGACTAGAGACTTTTACATTTAGAAAACCTATCAGTTACATAAAACTAAGAGGGAATCTGTATGTCTGTCTATTTGTTCTGTGCCAAAATCCTATTGATTCCATAACAAAGAATGACTATCCTTATTCTATACATTGTACCCTTTTCCTACAAAATGACGAAGAAGGCAGGCTTCTCTCTCCAGTTTCTCTCTCTTGGAGACCTGACCCCATGTTCTCCTCCCTCCCCACGACATGGATCCTTTAGCGGGCAAGCCCAGGGCTGCTTTCAGCTTCCATGTTGGGTGGCATGGCCTAACCTTAGGTCAGTGACTATTGGCTGATTAAGGAATTCTCCCTAATCTAAAAAACCCTAAGAGAGCCCTTCTGGAGTCTAACCAGAGTATTTACAGGTGATCAGGGCCTGACCTCTAACCCAAGGATTATGTCCTGGGGTTGTCTCAGGGCTGAAACAAGACAGGCTGTGGGGCAGATGGCAGATTGAGGTTTCCCCAGGTCTCTTCTCAGTCAGCTTCTGAGGCCGTCCTGCTGCTCCCTCATATACTGCTTGTGAGGACACAATATCTACCCTCCCTGATGATGGCTTCCATGGGAAGTTCCTTTTTCCTTTAAGTGAGAACTTAACAGATACTGATTTGGAAAAATATAATTCAAGCCAAAGCATAAAAATAGCAAAGAAAGTAGCATGGTCTGTTTCCTCCTAGAGGTAAGCAGTTATGCCTCTCACCTGCAGCTCACAGTTATAGCTTCATACCAAGGAGATACTTCAAACCCCAGGCTAGTGAGTCTAAAAGAAGACACCTTCAATTGTTCTTGGTTCTGCAAATGGTGCTCCTGAATTGGGAGTTTGAGTTGGTTTATTAATTGAAAGTGAGAAGGAGGAAATTACCTGGCAGAATCCTTTATTTTCTTATTTTAAAAAGAGGCTATTGTAATAGTGAAGTGATGTGATCTGAAATGAAATATTTTTAAGAAAGTTCAGGTTAAGAATAATGAGATGAATTATCTGAAAGCTGACATTATCTGAAGCGACATATGGAAAATAATATTGTGACATCCCTTAAAAAAACTTGAACGTTCCCCCAGACTTCCTCTTGTCCATCCCATCATTCTTTCAGTTTTTTGGATTTTTTTTCTTTTGCATGGGCTATGCTGTTATTTTTGGTTGTTGTGATTAAAAGTATTTTAAGGCATTTTTTTACATCTTGTATATATATTTTTTGTTTGAGTCATAATACTCAGTCTTTATATATAAAAAATAGTGTACTGGCCAGATGTATAAATGCCTTGTCCATACAAAAGCTAGTATTGTGGTGTCCTCAGAAGGAGCGGGGGAGCCTCTGGCCCCTTGGTCATGCCTTTCTCACATCTAAGGAGTGTTGCCTCTTTGACAGACAGCCTTGTGAACATAGAAGAGGTTGAAATCTTAAATTCTCTTCAGGTTTTTTATTCTACCTCCTGTCAGTTTAGACATGGAATTTCAACAGCAAACCTGTTCAAGGTTCACATTTCTTTTTGTTTGATGCTCAAGTCAATCTTTGAGTTGAATTTTTTTTTTTTTTTTGTGAACTCTCCAAATATTCATTCATCAGGAAAGGTGGGTTTTATCTGGGCCATATTTGCAATTCTAGACAAATAGCTCCCATCTTTGAGATTGTGGTCAGCTCTTGGGCTCTAGAACCTACCAGCACCAGCCCTAGAAAACACTTGGATCATTGCTACATCAAGCCAGTAGAGATCTGGCCACTCCAAGTGAGAGCTCTCCAAATCTTACCTTGCTCATCTGCCCCAACTTTTTTTTTTTTTTTTTTTAAGGCAGAATACTTAAGGAAGAGTATTTACTAAATGTTCATCATTTTTACATTACAGGAAACTCACTTTGGGAATGTACAGGATTGGTTGTGTTGCCCTTAGGAAGGATACTTCGTTTCTTCAGTTACTACTCTTTTGAAGAACAGGAAGATTGCTTTTCTTTAGTCCTTAAACAGTGTTGCATGCTTACAGCCAAGGATTCTTCGCGTGTCCCTAGCAATCCTCAGTATAGCTCAGGACTATTTTAAAAATTAAATTAGACGAATTCATCTGATCTTTTCTTGAAACTTTCTTGAAACAAGTGACATTTAAACTAAGATTTTTTTTTAACTTGCCCTTGGTTGACTGTTGCTTCGTGTTTTGCTTGCTTTATGCTGATATATCCATCCCATGCTTTTCTTTTATATTCTCAGGATGGTTTTTGTTCTCAGGATTCTCCCTGTTTCAGTGCACTTTCCAGACATCTAAAAGGCACTTGTTGACAAACTGCAGTGCACCAAAAAGGATTGTTTGGCTTTTTTGCTTCATTTCATGTTTTGCTGTGCCCAATGTCTATAAAGACAGCAGTCAATAACACTTTTCTGTGAACAACAAATATTTCTTGCTTTTATGAGGATTTTTAGATGTCCATCCAGGAATGTGACTTTTTATAAAATCTGCTTTGATTATAAAACTCCAAACAGAAGCATGTAGAAGAGTCTGATATTAATAGCAAGCTCATGGGTGAGATGATGTGAGAGTTACTTTCTGGGCCTGTTCATAGGGTGGATCTGACTTTGAGTCTAGGGTTTTTTGTTTTGTTTTGTTTTAATAGGGTTTTATTTGTTTTCTGGATTGGATACCTGGGAGTATAACCTAGCCTTGTGAGGTCATTTACTTTGCTCCTTTGAAATTTGCTTATAGTACTAGCTTTATTTCCAACTGCCCATTCCTCTTAAGTTTGTACATTTGAGACCAGTAACAACCAAACTCCTTTTTTCCATCTTCAAAATAAGAAAGTTATTTTTCCACTTTCATTATCTCGTGCCTTCAGTCACCAGTGTCACTCTTTGAGTTCCTGCATTCTCGTGGTTACTGTTGTTTCCCACTGGTTTTTATTGAGTGCTGATGTAATGTGTTTGGCAGATTTAACAAAGAAGATGTGTAATTGTCCGGTGGTGGTACTCTAACAAAAGACGTCTCCTTTTCATTCCAAATCACCCAATAAACAAAACTATAAATATGTCTTATTCTTTAAATTGTGGGAAGTAACTTATGCCCATATCTCAGTTCTATGTATATGCCTCGATTTAAGAAATAAAATATTTTTTATCTTTAG
Seq C2 exon
CATGCTGGACTATGATACAGAGAACCTGAACTCTGAAGAAATCTATAGTTCTCTACGTGGAGTTACAGAAGCCATTGAAAAGTTTAGTTTTCGAAGCCAAGAAGATCTGAATGAGCCAATTAAACGAGATGGCAAAAAGGAGTGTGATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-CLASP1:NM_015282:32
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)