HsaINT0036116 @ hg38
Intron Retention
Gene
ENSG00000256660 | CLEC12B
Description
C-type lectin domain family 12 member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr12:10010632-10012883:+
Coord C1 exon
chr12:10010632-10010850
Coord A exon
chr12:10010851-10012784
Coord C2 exon
chr12:10012785-10012883
Length
1934 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GCTCTTTTGGCTTTCTCCAGGGC
3' ss Score
9.36
Exon sequences
Seq C1 exon
AGTAGAGTGTGTCTGGGTCAGCTGAGTGACTACATCAAAGCTCCCAGCCTTGAAAAACACATGCTGTTCCCAGGCCTCAAGATATTGAAACATTAATTAGATAATTTAAAGTAGCGTTTTCTTCTACAATGTCTGAAGAAGTGACCTACGCGACACTCACATTTCAGGATTCTGCTGGAGCAAGGAATAACCGAGATGGAAATAACCTAAGAAAAAGAG
Seq A exon
GTAGGAGTTCAGAGAAGACCAGCTGTGTCCTTGGGGGAGTGGACAGGTGTTAAATGCTTTGAGGTGCCAGCTTTAATACTGGCGTTAAAGACATGTGCTGTGAAATCTCCAAAATGGGGACAAATAGTTGTGGAATGTATTAGAAAAGTGAGTGTTCCCAAGGTTGAAGTGAAAATATGTGGCTTTCAGAACCTCTTTAAAGTTGTGTGATATCACACAGTCAGAGAAATTCTGACTGCACATGCCAGAAATTGAGCTTGGGGAATTAGAGATTTCTTCTTATGAATATAATCCTTGATATTTATACCTTGTTAGAGATGCCAGGAGGATATTCTTTCAGAAACCAGATTGGAGGCTTCTAAAATAGAGAAGGTAGAGGACGTTTTTCTTTTAGATGATGTAAGTTACTTAAGAGAAAACTGGAAGATGAGTGAGTGGATTAGAAATAGATCAGAGCTAATTTTTCTTTTGTCAGTATTTTTTCAAATTTTAGGGTAGTTGAAATCCGAGCATAATTTGTAATGTTGAACCAGTAATAATAGTATCTGGGTAGTATTTTATGTACATTATATACAGATATAATTGTAATGAAAATCCACAATAATATTCGAATATTAGTATTTTCTCCATTACATAGATGAAAAAACTGAGGGTGAGAGAAATTAGATAATTTAAGCAAGCTCACACAACTGCTATGTGGGGAAGCCCAGTCTCAGTGCTGGTCTTCAGCTCATTCTCTTATGCCTAATTGGAAAAATAGCAGTCTCCATGGTCAAGACTCTGATTTAATATATAAGACCACATCTCTTATTTTCAGATATGTTAACTATCCAGGTTCTCCTGAATCATGTCAGTCATCTGAACTACTTTCTCCTGCCCTCTAGATTTATCTTTACATTTTGTGTGGTGCATGACATTTGAGGGAAGGATATTTACAAAAAGCCGATGGGAATAGACTTTGCATATGTCTAATAAATGTGGTTACACATTTTTGCCTTGTTTTGTTTTACTTTTTAATTCTAATTCTAACCTGTGAGGAAAAAGGAGGTGTGGATATGGTGCATATCACAGTGTACCTAGAGTCTGTCATGCTGTATCTAAAACATTGCGCTAGATGTTATTTGGACCTAAATCAAGGGATATGAAGCTAAGGAAAACATGACAACCATTGATATTTTAAACAACAACAATGACTAGGATGCTAACGGCTTTCTGGTCTATTCTGCTGTTTGTAGGTTAGACTGCACATTCTTTCCTTCTTTCATTCAGTATTCATTCATTATTTATTAGGTGATAAATAGCATGAATAATAGATAAGTTATTGTTAACAGGTAAAAGATACTTTAAAAAGTCGAATCCACTTTTACAAGGCAGATAGAACATGTGCCTTATAGAGACTTTTGAGCTCAAAAGCTTGAGGTGTCTCCTACTGTCAGCATCATCCAGAAAAGCAGTTTTTAGATCTCTCATTTATGAATTCAATAAACTTGAGGAAGAAAAGTGGGCAATGATGTAAAACAAAAACCTTGAAATTAGGAGAAGCTTCCTTTTTATTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGTGCTGCACCCATTAACTCGTCATTTAGCATTAGGTATATCTCCTAAAGGTATGCCTCCCCCCTCCCCCAACGAAGCTTCCTCTTAAAGTGAAGGAGAGCGGTGGAGAAATGGAGGGGAAACAAGGATGGCACCCTCATTGCACTTCATATTAGGTATTTTCTAAATGAGGGCATTAAAGAAGCAAGAAAGAAACGTTAGTATCGGGAAGCTCCCTAAGTGGGAGAAATAAACAAACCAAAGTGAAACAAGCACAAAGCAGTTCTGTGTGCTGATTGCTCTTTTGGCTTTCTCCAG
Seq C2 exon
GGCATCCAGCTCCATCTCCCATTTGGCGTCATGCTGCTCTGGGTCTGGTAACTCTTTGCCTGATGTTGCTGATTGGGCTGGTGACATTGGGGATGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256660:ENST00000338896:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083915=Ly49=PU(23.0=82.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGAGTGTGTCTGGGTCAGC
R:
ACATCATCCCCAATGTCACCA
Band lengths:
318-2252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development