RnoINT0037107 @ rn6
Intron Retention
Gene
ENSRNOG00000053638 | Clec12b
Description
C-type lectin domain family 12, member B [Source:RGD Symbol;Acc:1560487]
Coordinates
chr4:163148995-163153151:-
Coord C1 exon
chr4:163153060-163153151
Coord A exon
chr4:163149094-163153059
Coord C2 exon
chr4:163148995-163149093
Length
3966 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTGCCCTGTTGGTTTCCAGAAT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GATGTCTGATGAAGCGACCTATACGACACTGATGCTTCAGGACTCTGCAGGAGTGAGAGGTAATCAGGATGCAAATAACCTACGAAAAGAAG
Seq A exon
GTAAGAGCTTAGAGAAAGCATACCATGACTTTGCAAATGACAGGTGTTGAGTGCTTACAGATGCCAGCTTTGACACTGAAGGGCAGAGAAATGTGTGAAATAGTCCCCAAAATAGAGACAAACTGTCAGCAGAGTGAGTCTCCTTAAGAGAATTGATGGGGCTTTCAAGACCAGTGGGAATTGTTGGAATCACTGTTATGAAACTCTTCACTGTACGAGAAAGTATTAACGGGTATGTCAGAATTTGGGTCAGGCAGTGAAGATGTCTATTCATAAACACCCTTAGATCCTTTATGCCTTTTTAGCAGTGCCAGAGAGATGTTCTTCTAGAAGCCAAACAGGGTTCTAAACTCCGTAGAGGAAACCTTGCTGGTGTATGGCATAGCCTACTGAAGGGAAGGAGCCGAGTACAGTTGAATCAGAAATGATCGTGAGCTAGCTTTTGCTCTTATGCTGGTTTTTAACTCACTGTCTCTAGAACTCTGCCAGGGCCAGCCCTGGCAATGGCCAGGTCCCACTAAGGAGGTAGCGAGTGGGTGAAGAAGTGAGGCAGGCACAGGCAATCTTCCAGCCTGACTGACGATTGGCAGGTGGAGTGTTTCTTTATCGCTACAGAACTCAATAGACAAGGATAGATTCATATATTTCCAAACATAGATCATATCATTTTTGTACCTGGACATGTGTTTTAACTGCCTCTTGGTCATAAGTTTAATCATCAATGATAAACTGGGACAGAACAGATTGATCATCTACAACTGTTTTCCCTCATCAACCCCATAACCCAACTTTTAAGAATCCAGAGGCATATTTTGTCAAAGCGCAGCAGTCTGTTTTCAGGCTGCTAGCTCTTGCAGTTTCAAGGGTACTAGAAAGAAAAAATCTCCAAGCCAGCCTGGGCAGATTGCCACGTCCCGAGCAGTGTATTATCAACTTTTAATGGTCAGAGTGTTGATTTTCATTAGCCCCAAGAAGAATTTTGACGCCAAAGCTGTTGCAGTTATTATTTAATTTCTGGCACAGTGCAGTGTTTCTAGACTTTTATATACTTGGAAATTTTACCACCAGCAGCTAACTTTTCTAAGTAAGGGGGTCTTTTATTTCCTAGGACCGTAAGTTTATTATTTTTTAAAGTTTGGATATTTCATTTATTTACATTTTAAATGTTACCCCCTTTCCCAGTTTCCCCTCTGCAAATTCTCTATCCCATCCACCCTTCACCTGCTTCTATGAGGGTGCTCCCCCATCCGCCCACCCACTCCTGCCTCACCACCCTAGCATTCCTCTACACTGGGGCATCAAGCTTCCATAGGACCAAGGGCTTCCCCTCCCATTGATGCCAGATAAGGCCCCTTTGGCTCCTTCAGTCCTTCCCCTAACTTCTCCATTGGGGTCCCTGTGATCAGTCTGATGGTTGGCTTCAAGCATCTGCATTTATATTGGTCAGGATCTGAGAGAGCCTCTCTAGAGACAGTTGTGTCAGGCTCCTGTCAGCAAGCACTTCTTGGCATCAGCAAGTGTCTGGGTTTGGTGTCTACATGTGGCCTGGACCCCCAGGTAGGGCAGTCTCTGGATGGCCTTTTCTTCCGTCTCCGCTCCACTCTTTGTCCCTGTCTTTCCTTTAGACAGGAATAATTCTGGGTTAAAATTTTGGAGATGGATGGGTGGCCCCAGCCCTTAACTGGAGGGCCAGGCCTAACCTCTGGATATGGTGCATTCTTTAATCATATTTTCTATACCAGTCTTTGTCTGTAAGTATAAATCCTTGTGTAGGGCACAGATAACTCTAGCCAATGTATTTGTTGCTATATCTTTTCCTGAGGGGCTATATCATATGTGGCCCCCAATCTTTCTTTTCTAATTTTGTATTGATTATTTTATTTATTTACATTTCAAATGTTATCCCCCTTCCTGGCTTCCCCTCCACAAATTCACTATTCCATCCCCTTCCTCTCTGCTTCTATGAGGGTACTCTTCCTGACCTCCTACCCACCCGCTCCCACCTAGCATTCCCCTGGGGTATCAAGCCTTCACAGGACCAAGTGCCTCCCCTACCACTGATGCTAGATAAGGCCATCCTCTGCTACATATGCAATTGGAGCCTTGGGTCGATCCATGTGTATTCTTTGGTTGGTGATTTAGTCCCTGGGAGCTCTGGGGAATCTGGTTGGTTGATATTGTTGTTCTTCCTATGGGGTTGCAAACCCCTTCAGCTCCTTCAATCTTTCCTCTAACTCCTTCACTGGAGTCCCTATGCTCAGTCTGTTGGCCCCCAATCTTTTGTGCCATGTAATTGCCTGAGTATATAGTAAGAAGAGGCTTTTAACCTGTTCTGCCAACTTCTCTAGACCACCGAATCTTATTTATGAAATTAAGTTTACCTTGTTCTGATTATCTTTTTCCTGAGTAAGTACAGGGGCAGAGGTTCTATGAGTGTGTTAGAGCTGGAGCCTCATAAGGAGATCTCTGGCATCTTTATTTGAGTCACATCCTCCAGGGCATAAGGAAGACCTTCAAGTAAGGCCAGGTAAGGATAGCTCCCTGGAAGCATGAGGTGTAATATGTTCAGGAATTTCCCGGGGAAACTTAGCAGCAGTACAACTGGGAGAAGGTACACATGATGCATAAGAAATTTCCCATCAGTCCAATACCCCCAAGCATGCAATATGTGAAGACCAAAACCATAAGTGGAAGACAGCATGACAGCAATCGCATCACCTGGCACAGCTTTGCTAGGTCTCTGTCAAGCAGTTGTGCTGGCTTTATGACTTTTGCTGTTCTCATTAGATATGGTTGTACCAGAGCCCAAGGTATAATTCAGAGTATTTAATGATAAAAAATCTATGTATACATATCTTTATTGAAGTGTACATGTAAAATAAATAATATCACTATTTTTGCAGCTATGGATAGGAAAACTGAATCTTGAAGCAGCTAGGTTGCTTTCCACTTTTGTACAGGTATGTGGTAGATAGAGCCAGTCTTCCAATATCAGCTCATTCCTTTATGCCCAACTGGCAGAAATGTCAAGTCTCTAGAGCGAGTTCCATGTACAAGACTCCTTCACCCCCAAAGGTTGTGTTACAGTCTGAGTTGTTATTCTGAATCATATGCATTGCCGTCTTCCGCTCCATGGATTTGCTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGGGAGAAGATATGCCACACAACAATGAACAGCACAGTTTGCAGTGTTTATTAAAGGTGAGATGATTATGCTTATCTTTTCTGTCTCCTAATTCTCATTCAAATCTAACCTTTGAGTCAAGGGGTTATGTGGCTTTCATATGAGTGCTATTGTACTCACCTGGCAAAAACATTGTGTGCATCAAGGAAGAGAAAGCTGACAGATACTTTTATGACAAGCATGGTCCAAGAGTTGCCTGATAGTTCTGCATCTTAGACTAACTACATTTTTGTCCGGGATTAATTTACTCTTTATGACATAGAAAATAGGACAAAAATGACATAAAATTATTTTATTGGGTTAACCGTAATTTTAAAAGTATAATCCATCTTTATAAGTAAGGAAGAGCCACCTTGTTTTGGAGATTTGTGTCTTAAAATTCAGGTTTTTTTCTATTCTCAGCATCAGTCCAGAGACCTTACCTCCACATAACATTCATGATGTCAGTGGACTTGAAGAAGAAAGACAAAAAAGGGGACAAATGTAAAACAAACAAATAGCAAATTAAGTGACAATCACTCTTCAAAGTACGGGGGAGACATCACGAGTCATATTAGGAATATTTAAAGAGCAACATTAACAAAGCAAGGGGAAAGTTTAATAGCTAGAACGTTTCTGGGTGGGAAAAAACGATCCCCAAAGTAACAGAATGCTGTGTTTCTGCCCTGTTGGTTTCCAG
Seq C2 exon
AATGCCCAGCTCAATCCCCACTTTGGCGAGGAGCTGCCTTGAGCTTGATGACCCTCTGCTTGATGCTGGTGACAGGACTTGTAACCTTGGCAACTATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053638:ENSRNOT00000089712:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083915=Ly49=PU(23.1=82.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]