RnoEX0021672 @ rn6
Exon Skipping
Gene
ENSRNOG00000053638 | Clec12b
Description
C-type lectin domain family 12, member B [Source:RGD Symbol;Acc:1560487]
Coordinates
chr4:163148995-163153151:-
Coord C1 exon
chr4:163153060-163153151
Coord A exon
chr4:163150100-163150156
Coord C2 exon
chr4:163148995-163149093
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAATATCACTATTTTTGCAGCTA
3' ss Score
5.65
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GATGTCTGATGAAGCGACCTATACGACACTGATGCTTCAGGACTCTGCAGGAGTGAGAGGTAATCAGGATGCAAATAACCTACGAAAAGAAG
Seq A exon
CTATGGATAGGAAAACTGAATCTTGAAGCAGCTAGGTTGCTTTCCACTTTTGTACAG
Seq C2 exon
AATGCCCAGCTCAATCCCCACTTTGGCGAGGAGCTGCCTTGAGCTTGATGACCCTCTGCTTGATGCTGGTGACAGGACTTGTAACCTTGGCAACTATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053638_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=1.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083915=Ly49=PU(23.1=82.4)
Main Inclusion Isoform:
ENSRNOT00000089712fB3184
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTCAGGACTCTGCAGGA
R:
GTCCTGTCACCAGCATCAAGC
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]