HsaINT0036199 @ hg19
Intron Retention
Gene
ENSG00000188393 | CLEC2A
Description
C-type lectin domain family 2, member A [Source:HGNC Symbol;Acc:24191]
Coordinates
chr12:10065826-10069402:-
Coord C1 exon
chr12:10069299-10069402
Coord A exon
chr12:10066280-10069298
Coord C2 exon
chr12:10065826-10066279
Length
3019 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTAGAGTGTTCTTTTTCAGGTT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GAATTTTTGAAGAGGTACGCAGGAACTGATATGCACTGGATTGGACTAAGCAGGAAACAAGGAGATTCTTGGAAATGGACAAATGGCACCACATTCAATGGTTG
Seq A exon
GTGAGTTTCCAATGTATTAGCAATGTTCTTATTCTGGTGTGTCATATGAAAAATTTTAAATCATTTTGAGTTGTATTATTATAAACAAATCTTTCTGTTTTCCATGTGGAATTAACTTTTCAGTCTCCAATCGATGACATATGCCCTTTCACATTGAAGCATATCCTAGAGCAACCCATTTTCTTCTCACCTTGTTAAATGACACATGGTGAAATCTTCCATTTTTATTTTTATTTGTTATTTTATCTTTATTATCAAGCTCTTGCTTGACAATTAGTTCTCTTTTGCTAATTCAAATTTAATCATTCTGCAAATTTTAAGCCAAAACTCACGTATTACTTGTACTTCTTTCCAAGTAAAGTGTATATAAGATTTCTTTGTCTTTAAAGGGTTAAAGACTTTATAGTTGTCTTTAACATTCCAAATGCCCACCACAATGAATACTACTTGTTTTTATTTATTTGTTGCTTATTTTATTTATTTTTATTTCTGTAAGCATTTCCTGGGTGGGTTAAAATTGTTAAAAGTGTTTCTTGGGTTAAAATGGTTGAGGATTGTATAGTTGTCTTTAGCTTTCCAAATGTTCATCATAAGCAATATTATATTTATTTTTTTAATTTTTGTTTATTTTTTATTTAGCTTACTTTTTTATTTATATAATTGTTTCTTGGATACATATGTATCTCTGCCTTATTATTTTAGTAACGTGCTAGATTAAAAAAAGCAACCAATAAAACAAATATTGAAATATGCAAGACAGGACAAATTATACTTATAAATAAGGAAAGATTTGTTTATCAACAAAGAAAATTAATTAAAAAATATATTTTTATTTTACTGTAAGTTCTGGGATACAAATGCAAAATGTGTAGGTTTGTTACATAGGTATGTGTGTGCCATGGTGGATTGTTGCACCTACCAATCCATCATCTAGGTTTGAAGCTCCACATGCATTAGCTGTTTGTCCTAATGCTCTTCCTCCCCTTTCTCCCACCCCCTACTGCCCCCAGTGTGTGTTGTTGCCCTTTCTGTGTCCATGTGTTCTCACTGTTCAACTCTCACTTATGAGTGAGAACATGCAGTGTTTGGTTTTCTGTTCCTGTGTTAGTTTGCTGAGGATGACAGTTTCCAGATTCATCCATGTCCCTGCAAAGAACATGGACTCATTCTTTTTTATGGTTGAACAGTATTCCATGGTGTATATGTACCACATTTTTTTTTAACCAGTCTATCTTTGATAGCCCTTTGGGTTGATTCCATGTTTTTGCTATTGTAAATAGTTCTGCAATAAACATATGTGTGCATATGTCTTTATAATAGAATTACTTATATTCCTTTGGGTATATATCCAGTAATGGGATTGCTGGGTTAAATGGTATTTCTGGTTCTAGATCCTTGAGGAATCACCACACTGTCTTCTACGATGGTTGAACTAATTTACACTCCCACCAGCAGTGTATAAGCATTCCTATCTCGCCACAGCCTCACCAGCATCTTTAGTTTTTTGACTTTTTAATAATTGCCATTCTGATTGGCATGAGATGGTATCTCATTATTGTTTTGATTTGCATTTCTCTAAAGATCAGTGACGTTGAGCTTTTTTTTTCAAATGTTTGTTGGCTGCATAAATGTCTTCTTTTGAGAGTTGTCTGTTCATATCCTTTGCCTACTTTTTGATGTTTTTTTTCTTATAAATTTATTTAAGTTCCTTGTAGATCCTGGATATTAGACCTTTGACAGATGGGTAGATTGCAAAAATTTTATCCCATTCTGTTAGTTGCTTGTTTACTCTGATGATAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATCCCATATGTCAGTTTTGGCTTTTGTTGCTTTTGACGTTTTCATCATGAAGTCTTTGCCCATGCCTATGTCCTGAATGATATTGCCTAGATTTTTTTCTAGGGGTTTTATGGTTTGGGGTTTTACATTTAAGTCTTTAATCCATCTTGAGTTAATTTTTGTATAAGGTGTAAGGAAGGGGTCCAGTTTCAGTTTTCTGTGTATGGATAGCCAGTTTTCCCAGCGCCATTTATTAAATAGAGAATCCTTCCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGTTCAGATGGTTGTAGATGTGTGGCATTATTTCTGAGGTCTCTATTCTGTTCCATTGGTCTGTATGTCTGTTTTGGTACCAGTACCATGCTGTTTTGGTTACTGTAGCCTTGTAGCATGGTTTGAAGTCAGGTAGCATGATGCCTCCAGCTTTGCTCTTTTTGTTTAGGATTGTCTTGGCTATATGGGCTCTTTTTTGGTTTCATATGAAATTTAAAGTAGTTTTCTTCTAATTCTGTGGAGAATGTCAAAGGTAGTTTGATGGGTATTGCATTGGATCTTTAAATTACTTTGGGCAATATGGCCATTTTCACAATATTGATTCTTTCTATCCATGAGGATAAAATGTAAAAAAAAGACTATAAGCAGTCTCTTAGGTTTCTATTGCAGTATGCAGTCTCTTAGGTTTCTATTGCAGTATGTTTCAAAAGTACCAAGTAAATATAAATCTTATTTTTACTTTTTGAAAAAGTACATTGCCTAAAATTATGCCAGAAAACTGAATTTTTTTAATTTCAGGAATCTTTGAATTTGGCAAACACTCTCTCTTTGCATATAGATAGAAAGGAAAGAAAGAAGAAAGGAAGGAAAGAACCAAGGAAGGAAGGAAGAATGGAAGGAAAGAAGGGTTTTACCCCGTCTTTGTATACCTATATGTGTCTATCTGCCTATCTACAAGTTGTTCTAAATAGGGTTACAGATTTTAACTCCAACACTTATGTTCAGTCTTATTTTTCCCTTAATATACCAGATATTTTAATGCAGCATATGGTGATGGGTGGGTATATTTTCTGGGAGCTCAGTGTTTGGTATAATATATTTAAAATCACTCTATTATTAATTGTCTTTTTGATTACAGCCGTAAGTGGTTCCCAGACTGATTTAGAGTGTTCTTTTTCAG
Seq C2 exon
GTTTGAAATTATAGGGAACGGATCCTTTGCTTTCTTGAGTGCTGATGGAGTCCATAGTTCCAGAGGATTTATTGATATCAAGTGGATTTGCAGCAAACCTAAATATTTTTTATAGAGCAGAAAAAACTTGAAAATGATTATCACACTTCAAGATTGAAAGAAGAGCTAATTATGCAAAAGTGGCTTTCTCACTTATTCTGTTACAGAATACGGAACCTCTGGTGAGGGCCCATTTTCTAGTTTATAGATGGAAACTTCTTGCTGTGCCCTGCCATGGTTAAAGAGACAAGGCCGTTCTCTGGAGCCTTTTATAAGGGCACAATCACATTTACTATGGCTCCATCCTCATGAACTAATCACCTCCTGATGGATGGCTCCATCCCCTAATACCATCACACTGGTGATTAGCTTTCAATTTATGAGTTTTGGGAGGACCCAAATACTCAGAACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188393-CLEC2A:NM_001130711:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(43.6=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(35.7=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)