MmuINT0037187 @ mm10
Intron Retention
Gene
ENSMUSG00000030364 | Clec2h
Description
C-type lectin domain family 2, member h [Source:MGI Symbol;Acc:MGI:2136934]
Coordinates
chr6:128674732-128677374:+
Coord C1 exon
chr6:128674732-128674838
Coord A exon
chr6:128674839-128675780
Coord C2 exon
chr6:128675781-128677374
Length
942 bp
Sequences
Splice sites
5' ss Seq
CTTGTACGT
5' ss Score
5.14
3' ss Seq
ATTTATTTATTTTGATTTAGGGT
3' ss Score
9.21
Exon sequences
Seq C1 exon
AATTTTCTGAAGAGATACAAGGGGACTTCTGACCACTGGATTGGCCTGCACAGAGCATCAACACAGCACCCTTGGATATGGACAGACAACACTGAATATAGCAACTT
Seq A exon
GTACGTTTTCAGAAAACTTTCCCTTATACTGTGTTTATTTGCTGTGAAATGTGTGAGTTGTATCTGTAAGAGATGAATGACTATATCATGTGAAGCCAACTTTACTGAGAAGAAAGAAAACATAAATCTTCAAAGTGCAGGTGTGGCTCAGAGCCAGATTGTCTGCTTACACTCAGAGCCATCACCAGCAACACCACCACATCACAAACCTAAGTCCTTCGGATATGCTCCCATTTATTGGCCATGATTTTCAAGGCATTTACTTAATTCAATTTCTCTCAAAACCTTTCACATGGTGATGATATCTAGGGGAGTTATTGTCTGCTCCATCACCAATGGAAAACTTTTCTTTGCTGGTGTCAGAACTATAGGTGGGTGTTGGGGGCTCCAAAGCCCAGCAAGCCAGTGCAGAACTGCATGGGTAAGACTTGTTGGTTCTCTGTTTGCACTGTACCTGTTCACTGAAGCAAAGACTCAGGGGATATTGGGAACCTCTCTAAAGTCTTCTCATCAAAACTCATGAGATAGCTCTTGTGTGTGAGCATGGCTAGCCATTTTGAGTGGAGTCATTTCACTGGAGTGATAAAACACAGACCCATTCACAGCCATCATAAAAGGCCTTTCAGACATTTACTAAGAATTGGGTTTTTCCTCACTTGTATAACTTATATAAAATACTTCAAAGTAGAACTGAAAATCTCCATCAGTGAGGTCAGATGTGGCAGCAGTTTGTTTGAAAATGGCAGCAAACACCAGTCAATTTCCTTGTACACATTACATAGTTCAACACTGAAGAATAATGAAGGTGTGGTTCAAATTGAGCCCTGAAGATGTAAAACATTCTCAGTGCAACTAGCACTGGTGTTTAAATGCACTGTTGACGTGTGCAGTAACTATTGATTGTTTATTTATTTATTTATTTATTTATTTATTTTGATTTAG
Seq C2 exon
GGTTCTCACGAGAGGAGGAGGAGAATGTGGCTTCCTGAGTGATAATGGGATCAGCAGTGGCAGGAGCTACACACATAGGAAGTGGATTTGTAGCAAGTTTGTCAGTAGTTGTAAATCCAGAGTAGGAAGTGTACCAAGGCATGTGTGAGAATCAATCAGATGCTCTATGACCTGTTATCTACAGTTGGTGCTCTGCTCCTGATCAACCAAAACCATTATCAAAAACCAAAACCATTATCAAAATCCAGCAATAATCACATTGACAGCCAAGATGAAAATTAGTTTAGAGGAGTGTTGGGCACCGGACAACCTGAGTAGGAGACAACCTGAGTCCCGCCAGAGTACTGGTGCTCTGGGCGGCCATACTCAGGAGTACTGCTGCAAACTTTCAACGTGGCCCCGGGTGGGTGTCTGGCTGTGGGAAGCCAGAGAACCCCAGCCCGCGGGAGTTGGGGTGTGTGGACAAGTGGCATTCCGAGGTCTCTGAGCCTCATGGATGCCAGAGATAACAGGTTCTCCGTCTCGAGCATCCCAGACACCGTTGGACACTGTGAAAGAGCTAAGGACAAAGTGGGAGCCCAGGGGGCAGCTTGGACAATTTTTCCTGATCTGAAAAGAATCTAGTAAAGAGTAAAATTCAAATGGCATACACACGTATGGAATTCTCAAAAAAGATGAGACTCTCGCCTCGCCCCCTGCTGTCTCCTCCCTTTGGTCCTGGGGATGGCCAAGCACTATTTATTGATATTGATCTTACTTCCTGTGCTAAGCACATTATTTTGAGAAATGTTTTGCAGTTCTTATCAAGTTTAGTGTATCTGGTTTTATACTGAAGTCTTTGGTCCATGTCGAACTAAGTTTGGTACAGAGTGATAAGTATGATATATTTGCATTTTTCTAATAAAGACAGTTTGAAGATCAGTTTCACCAGTTTCATTTGTTGAAGATGCTGGCTTTTTATCTGGTGTGTATTTATAGATTCTTTATCAAACATCAAGTGTCCAGGGGCTGGAGACTCTGCTGTTAAGAGCATTGGCTGCTCTTCCAGAGGAACACAGTTCAGTTCCCAGCACCCATGTGGCAGCTCACATCTATTTGTAACTCTAGCTCCAGGAGATTGACACTGTAACACAGACACACATACAGGTAAAACATCAGTGCACAGAACTGGAGAGACGACTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCTACCAACCACATAAAATGAGGATCCTATGTCCTCTTCTGGTATGTCTGAAGACAGCAACAGTGTACTCACATACATTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGGATGGATCTTAGATGACCACAGGAGGAGGGACACTGAACCAAGGTTATCTACTGTCCCAAAAAATTAAAATCAATGCACATAAAAATAAATCCTTAAAAAAATGTGAGATGTCCATAAGCATGTAGACTTACATTTCTGTCATTAATATGATTCTGATGCTCAGCAGGTTTGCTTTTTGGTTTTGTTTTAACACTGTGCTGTTTGCATCACTATACCTTTGTAATAAAATCTGAGATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030364:ENSMUST00000032518:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.5=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.3=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATCAACACAGCACCCTT
R:
GTGCCCAACACTCCTCTAAACT
Band lengths:
357-1299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types