HsaINT0036283 @ hg19

Intron Retention

Gene

ENSG00000172243 | CLEC7A

Description

C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]

Coordinates

chr12:10277896-10279307:-

Coord C1 exon

chr12:10279170-10279307

Coord A exon

chr12:10278048-10279169

Coord C2 exon

chr12:10277896-10278047

Length

1122 bp

Sequences

Splice sites

5' ss Seq

CAGGCAAGG

5' ss Score

3.33

3' ss Seq

TACTAATCTTTTATTTCCAGGGG

3' ss Score

7.73

Exon sequences

Seq C1 exon

CTATTTGGAGATCCAATTCAGGAAGCAACACATTGGAGAATGGCTACTTTCTATCAAGAAATAAAGAGAACCACAGTCAACCCACACAATCATCTTTAGAAGACAGTGTGACTCCTACCAAAGCTGTCAAAACCACAG

Seq A exon

GCAAGGGCATAGTTAAAGGACGGAATCTTGACTCAAGAGGGTTAATTCTTGGTGCTGAAGCCTGGGGCAGGGGTGTAAAGAAAAACACTTAGATTCAATGATTGTAAATTTAAGGCAAATACACATATTAGTATTACCTTAGTGTAATGTATCCCTGTCATATATACAATAAGGTGAAATTATAAGTACCCTATGCAGTTGGCTGGACAGTTCTAAATTGGACTTTATTAATTTTTAAAATCAGTAACTGATTTATCACTGGCTATGTGCTTAGATCTACAGGAGATCATATAATTTGATACAAATAAAAGAAAAGTGTTCTCTCCCCTTACAGAATTGACATTTTAAATGCGATACAGTTAGAATAGGAAATATGACATTAGAAAGGAAGAATGACAGGGAGAAAGGAAAGAAGGGAAAATGTTGCCAAGAATAAGGAAGCTATATTAAAAATATACAAAAGAGGTAGACCTAATACACATGTCCCTGAAAACTCATCAAATTTGTTTAATCATACAATTTCATTTACTTAATTACAATTCTATACACACTTGACTTTTACTTCTAATTGCATCATAATTGACTATGACTTAATGTTTTCAGTTCAATTTTTCATCTCTGGACCCATACCTTCTCACTATTTTTATTAAGTAGCTAATAATATATAACAGAGATAGTGTATAATATGAATAATTGGCCTATACTTTTCTCACTTGGAAAGTCACATTATGAAGTAGATCTTACATCATAAAATAAGTAGCAATATGAAATTGCTGTGTACCTCAATGACTGATTGTGAGTGGACTTATTTTAAGGAGTTATTAAGGAGAAAGGTAGTTTTGAGCTGAATTAGAAGGAATAGAAGACAAGTGAAGAAAAAAAGGATGGTTGGCTGCCTAAAATACTATTTATAGCTAGTTTGTTTTTAAATTTTAAATGAATAGGAAGATTTTAATGTATTCTCATCTGTAAAATCATATCCCTGTAGTTCGAATTGACAATGAAATATAAAAATGGCAACTAATTGGTTATTTCATAAGTGTCCTTAAGATGAATGGTGTTCACACTAAAAGAGTGAATTGGTATGCTATGAACCTCATGGTACTAATCTTTTATTTCCAG

Seq C2 exon

GGGTTCTTTCCAGCCCTTGTCCTCCTAATTGGATTATATATGAGAAGAGCTGTTATCTATTCAGCATGTCACTAAATTCCTGGGATGGAAGTAAAAGACAATGCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000172243-CLEC7A:NM_197948:3

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.217 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF139031=Claudin_2=PD(22.4=40.4),PF0033515=Tetraspannin=FE(34.3=100),PF0769011=MFS_1=FE(40.4=100),PF083915=Ly49=FE(60.5=100),PF059667=Chordopox_A33R=FE(37.7=100)

A:

NA

C2:

PF0033515=Tetraspannin=PD(35.1=92.2),PF0769011=MFS_1=PD(25.4=56.9),PF083915=Ly49=PD(1.3=2.0),PF059667=Chordopox_A33R=FE(41.0=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000302569