MmuINT0037271 @ mm9
Intron Retention
Gene
ENSMUSG00000079293 | Clec7a
Description
C-type lectin domain family 7, member a [Source:MGI Symbol;Acc:MGI:1861431]
Coordinates
chr6:129417535-129419021:-
Coord C1 exon
chr6:129418887-129419021
Coord A exon
chr6:129417687-129418886
Coord C2 exon
chr6:129417535-129417686
Length
1200 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
GATATTAATTTTCTTTCCAGGAG
3' ss Score
8.12
Exon sequences
Seq C1 exon
CATTTTGGTGACACAATTCAGGGAGAAATCCAGAGGAGAAAGACAACTTCCTATCAAGAAATAAAGAGAACCACAAGCCCACAGAATCATCTTTAGATGAGAAGGTGGCTCCCTCCAAGGCATCCCAAACTACAG
Seq A exon
GCAAGGGCAGCACGAAAGGAGCAATGGGATCCCGGATTCCAGAGGTTCATTTCCTGGTGCTGAGGCCTGGGGTGGGGAATATGTTTACATCTACTAACAGTGAATTCAAGGCAAGCAGACCTAACAGAATTCCCTTAGCATAACATACCCTGCCAGACAGCTGGTAAAGTGGCATCACAAATCCACAGCTCTTTCACTTACTAAAAGGAGCAGTAACAGCTCTTATCTCTGGCTGTGTGCTGAAATCTATGAGACATGATAGAATTTGATGCAAACGAAGGGGTAGTGTTCAGTGTCCTTATGGAACTGATATTTTTACAGTGATGTTAGAATAAGATAGATGTGAGGGAAAGGAAATATAAGGGAGAAATGAGGAAGGGACACTGAAGACTGTAAATGCTAATAATATACAGAAGAAATGGACCTAATAACTCACTGAAAACGCTGCTTAATCATAGCATTCAAATGATTTCATAACTTTTTTTCTATATCCAGCCTGTGTTTCTGATTGAATCATAGCTGACTGACAATGCTTTCCCTTCAGCAGTCCACCTCTGGACTTACCTCCCCACTGTCTTCAGCTAACAAAATGCAAAAGAGCCTTTGAAATATAAATAATTAGCTTTATGCCTCTTCATAGGATAAATTAAACCAAGTAGAACTTCTGTTTGTAGCCATTGATTTTGAGTGGTATTTGTTTTACAGAGAATCAGAAAAGAAAGGGAATCTAGGCCTAAGCTTGAAGTAGTGGAAGAGATAAGTCTAGTTGTCTATTTAAAACACTACACAAACTCAACTGATTTTAAATTTTATATGTGTTTTGCTTGCATGTTTGCCTGTGTGTACCACTTGCATACCTGGCACCCTCAGAGGCCAGAAGAGGGTACCAGTGCCCAGAAACTGCAGTTATAGATGTTTGTGAAGTGCCATATAGGTTCTGGGAAACAAACCTATGTACTCTGGAGGAGCAATCAGTGGTCTCAAACACTAAACCACGTCTTTAGTCCCTTTACTTTAAATTTTTTAAACAAGCAAAGAGATTTTTAATATATTCTGTAAAGTTATCATCTAATTTGTGTCAAAAATTAAAGATGTGTTAAAGAAATATGTTAATGAAAATTTATTATTAGGTACTCATGAAAATGCACTAAGAGAATTATTGTTATACTATGAATTTCATGATATTAATTTTCTTTCCAG
Seq C2 exon
GAGGTTTTTCTCAGCCTTGCCTTCCTAATTGGATCATGCATGGGAAGAGCTGTTACCTATTTAGCTTCTCAGGAAATTCCTGGTATGGAAGTAAGAGACACTGCTCCCAGCTAGGTGCTCATCTACTGAAGATAGACAACTCAAAAGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079293-Clec7a:NM_020008:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PD(49.2=72.1)
A:
NA
C2:
PF0005916=Lectin_C=PU(25.2=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTTGGTGACACAATTCAGGGA
R:
TGAGTTGTCTATCTTCAGTAGATGAG
Band lengths:
278-1478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: