HsaINT0036336 @ hg38
Intron Retention
Gene
ENSG00000159212 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
Coordinates
chr21:34708700-34709538:+
Coord C1 exon
chr21:34708700-34708806
Coord A exon
chr21:34708807-34709356
Coord C2 exon
chr21:34709357-34709538
Length
550 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTCTTGCCCTTCTGTTTTAGTTC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GTATCCCAAGCTGGGGACCCAACATCCCGAATCTAATTCCGCAGGAAATGACGTGTTTGCCAAATTCTCAGCGTTTATAAAAAACACGAAGAAGGATGCAAATGAGA
Seq A exon
GTGAGTACCTCCCATCCTCCTGTTTTGTTTCAACACAGACTTGAGTCTTAGCATGGCGGCCCATACGCTCCTGGGGTATTCCCATCTATTTCCCAGTGGGTAGAGAAGTGAGTCTGGAGCTACAGAAAAAGTGCCTCCAACTTTGAATCTGCACGTGGGCTTCAAGAGATGAATGCTTCTTTTGAGGCTGGGAACTCAGAAAACAACATTTTTAGGGAAAATAGTCATCACCCAGGTGTTCCGGACACACCATGGGAATCATGTTCAATGATGTTTCTGCCAGTCCACGTCTCCCCACAGGCTTTCCATAAGTATTTTTGAATAAATAAATCACTTCTAGAAGGAGCAATATTGTGTAGACAGCAGTGTGATTTTCCAGGGAGGAGTGAGCCCTTTATTCAGATATTCTACATCCACCTGCTGCCTTCCCAGCACCCATTGCTTGCTGGCCACATCTCAGCGAGGAAGGGAAGCAAACTCCATCACAGCTGGTGAAAAGTGACATGCACTTGCAAACCTCTCTTTGTGATTTCTTGCCCTTCTGTTTTAG
Seq C2 exon
TTCATGAAAAGAACCTGCTGAAGGCCCTGAGGAAGCTGGATAATTACTTAAATAGCCCTCTGCCTGATGAAATAGATGCCTACAGCACCGAGGATGTCACTGTTTCTGGAAGGAAGTTTCTGGATGGGGACGAGCTGACGCTGGCTGACTGCAACCTCTTACCCAAGCTCCATATTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159212:ENST00000360731:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(17.5=48.6)
A:
NA
C2:
PF134101=GST_C_2=FE(58.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCAACATCCCGAATCT
R:
AATATGGAGCTTGGGTAAGAGGT
Band lengths:
270-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development