HsaINT0036452 @ hg19
Intron Retention
Gene
ENSG00000179335 | CLK3
Description
CDC-like kinase 3 [Source:HGNC Symbol;Acc:2071]
Coordinates
chr15:74914835-74917359:+
Coord C1 exon
chr15:74914835-74914901
Coord A exon
chr15:74914902-74917242
Coord C2 exon
chr15:74917243-74917359
Length
2341 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTCCTTCCCGGGTACCAGAGG
3' ss Score
3.66
Exon sequences
Seq C1 exon
ATGAGATTGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
Seq A exon
GTGAGCGAGCTGCGGCAGTACAGCTGGCTCCGGATGTGATCTTCCTGGGAAGAGCTGGCCTGAGGTTCTTGAGGGTGGCAGCTATCAGAGCTTAACTTTTTTCTTTTTGAAGGGTGGCATCAAAGTAGGGTTCCGACCTGTCCATGTTGGGGTTTTGCTGACCCCCTGTAATAAGGGAGAAATTCTTGGGTCCTGCAGTTATGTGGCATCCCTACCCAAGAATTGTTGGTCAGTGAAAGGTTCTGCTCCAATCTCTTCACTTCTCCAGGGCTGTGGTGGTGGATATCAGAACAGGGCCAAGGCCCCGGCTCCCCTGTGGCTTGGAGCTGCTTCCTGTGATAACTTTTAGGTTCTTGGCTTAGCAAGGGGCTAGGAGTACCAATAAGCCCAGCCCAAGCATAAGTCCCATTCCCTGAGGGTCTGCCTGAGAGGCTGTGCAGATCTCAGTCGAGAGAAACATGACCCTGGGCTTTCTCACCAAGCAGGCTGCTGCCTTCTTCAGTGTGACTAGGGTAGTGTGTGGTCTCCGCTGAGTGTGCCTGGGAGAGTGGGGTATACCTGTGTGTGTCATGCTGCACCTCACTCTCTCCCAAGCCCAACAGTACAATAGTTTTTTCCCCTTACCATTCCACAAGACTAGAACATTTGCTTCCTCTCCTATAGGTCTGGGTTGGGGAGGCCACCTCCAGGGAGCCAGTTGCCACCCTGCCATAGGCTCTCTAGTTGGTTTGGCACTTCAGCTACAAAGTGCTTGTGTCCTCATTGGAGCCACATGCCACCCATATGTGGCCCTCTCGCTATTTCAGAGATGAATAAACATGCTCAGGGTTTGCCTGCATCATACTCCAGTTAACAGCAGAGCTGGCCACCACTGCGCTGTAGTGCTCCTACATTAAATGGGGTGTTCAGGTCATTCAGACCCAGGCGTCCAGCCTTTCCTGTGGCCACGAGATAGACTGAGAGGAAGTGTCCATTTGCTCCAAGTTCCTATGTAAATGCCTGTACGACTCAGCGTGGCCCAAGAGGTTAGGGTTGGGACCAGTGGGTGGAGGGACATGCACAACCACACCGTGGCCAGGTGGAGACATGGCAGACTCAACAGCCGGGATGCATGTAGGCATTCTGGGCTGCTCCTCTCTCAGGAGCTGGAGGGAAAATGAGCCTCTGGAGTCACTAGGGGGCAGGTGGAGGGTCCAGGGAAACTTTACGGGACTCAAAGGGAGCCAGGGCCAGTGGGGGTTGTCATGCAGAGGCAGAATTCAGCTCAGCGAAAGGCAGGGTCTTATTCTAAGAGCAGTGCAACTCTGACAGGGGCTGCCTTGGAAGTGATGAGCTCCCTGTGCTGAGGACTGGAATGCCACGGAGGGACCCTGTTTTAGGAGGAGGCCGGAGTGCATGGCCTTTCCCCTGAGGTCCCTTCCTGCCCTGAGAATCTGGGAAAATAGGTAGGGAGAAAAAAGCAGGGGATTCTCTAGAAGGTCCCTTTATCCTGGGCCTGTGAGCCTTAGGCACCACAGTCAGCCTCCCTGAGGCCTCAGAGGACACGCCCTTCCAGGCTAGGACTGTCTCGTTCCCCACTGGGCATCTGAATTCTAGCTGTCCTTTCCTGACAGGGCCTGGCAGTTGAGCCTCAGCAGGTTTCCTTCTCTGCTGGCTCCCTGCAGATGGCCTCCTGGGGTGAGGTTGGGGGTGGGAGGCACAGAGCAGGGACTGTTAAAACCTTCTTTGGACACTTAAGAAGGGTTCCTGGCATTTTGTGGTCACTGATAAACACTGTGGCAGGTAGGTGCGGCTGGAGAGGGGTGTGGTAAAGGGAGTGGCCCTGGGCCTCACAGTGAGAGGTACCCTTGCTGGTACCCCTACCTCTTGCCAGATCTTTACTCGATCCTGGAACCCCCATCCCTGTTTGCTCAGACTTGCAGACAAGCTCAGGAAGGTCAAGAGGCGCCGCAGGAGGGTTCTCGGTGGGACAGCCTGGCCAGGGTTGGGGCTGCCTGGCCTATAGGTTAGGTCACTGTGTGAGCTCTTGGACTGGCACTGGTTAAGCAGGATTGGCCTCTACTCTCCCACACTCCTTTGGGAGCTGGCAGTGGCTGAGAACATAAAAGCCTAAGGATGGCAAGGATGCTAAGAGCATTAACTCACAGATCTCAGGGAGCTTGCTGTTGGGTGGGCAAAGGTCTGGTGTTGCATGGGGCAGGCTGGGCATCCAGTATCTGCTCTCTTCAGTGCCGGCTGCTCCTGGAGTGGTGTTTGTTGGGAGTTGCTGGGTTGGGGTGGAGGGTTGGGGAAGGACTGGGCAGCTGCTGATGAGAACCTCTGTTTCCTTCCCGGGTACCAG
Seq C2 exon
AGGGAAGTCTCAGGTTGCCCTGAAGATCATCCGCAACGTGGGCAAGTACCGGGAGGCTGCCCGGCTAGAAATCAACGTGCTCAAAAAAATCAAGGAGAAGGACAAAGAAAACAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335-CLK3:NM_003992:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(26.2=95.7)
A:
NA
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)