RnoINT0037396 @ rn6
Intron Retention
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62532791-62535332:-
Coord C1 exon
chr8:62535266-62535332
Coord A exon
chr8:62532908-62535265
Coord C2 exon
chr8:62532791-62532907
Length
2358 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTCTTTCCTGCTCTATAGAGG
3' ss Score
7.75
Exon sequences
Seq C1 exon
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAG
Seq A exon
GTGAGCATGCTGGCGTCAATATCCTTGAAAGAGCTAGTGCAACTCTTTTTGGAGGGTGGCGCCATTGCTGGATTGTGTCGGGTTTGCTGATCTCATGATCTAAGGGAGACACTCTTAGGATTAGACATGCACGTGATAACCTACAAGAACTTTTGGTTAGTTTGTGCCTCTTCCTTGGTTACCTACTTCTGAGCTGTGGCATTAGATACTGTGGCCTAGTGCTACATCCCATGAGCTTTTGGAGAATTTTGGCCAGGCCTCATCCATTTTTCTGGTTTTTGGGCAGAGAAAAGAATACATATAAGGTTCTGGGAACCTTTGAGGAATTAAAAGGAAGTCAGTGCAGGGTCAGTGGAGGTGGACTTCAGTTCTACCAGCAGGGCCAGTGGCTCCTTTTGAAATGAGTTACATCTATGTTAAAGATAAGACAGCTGTGGGGAGGGACCTTGTTTTAGAAGTCTGAAGTAGTGGCCTCTCTTGGCCAGAAGGTTGAGAATGCTGCTGGCTTGGCCTGATAGTGCCTTTGCCCCTCCCGTGTCTGCCGGAGAGATCCCAGTTGAGGGAAATGAGACTTTGGCCTTTCTCACCAAACAGCTACTACTACCTACCCCATTATGGCTAGGGTCATGAATAACCCATGCTGATTGGGGAGGCAGTACCTGTATGTCATAATGCTGGGGCCAAATCATTCTTTCCAATCCTAGCAATATAACACTTACCCCTTATCATCTGCAAGAGTAGAGTCTTTGCTTCCTTCCCTGTAGCTGTATGTTAGAGAGGTAACCCTCTGGGGAGCCAGTTGTGTTCCTGCCTTAATAACCTCTAATTGCTTTAGTGCATTAGCTACAGAGCGCTGGTATCCTCATTTGAGCTATGCCAGTCACTGCTGCAGACATAAAATATGAAGATGTTCTGAAGTTGCCCAAGTTATACCTCAGCCATTGATGACAGAGCTGGACCTGCTATTCTTGGTCTCTCACATTAAGTCAGCTGCTCAGAAAAGACCACTGGACCCAAAGTTAGCCATTCCCTCAGCTATGAGATGAAGTACTAATGTGACTGAGAAACTTCCTCCTGGTCCCATTTTCCATTCAAATACCCCTTCACCATGAACCTAGAATGAGTATATAGGAACACATATACACTGTCCTGTGACCAGATGTAGTCAGGACAGACCCAAGAACTCTGACCTATGAAGACAGCTATACTGTGTTGAGTAGCTGGATAGGAAATGAGTCTGGTCACTAAAGGACAGACAAGGTCCTGGGTCCTTTAAGGGGAATACAAAGGGAGTCAGTGCAGGGCCAGTGGATGTGAACTTCAGCTCTGCCAGCAGCCCTGGCAGGTCTTCTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTGGCAGGGCTTCTTATGGAATAAGTTACACGTATGTTAAAGATAAGACGGCTGTGGGGAGGAACCTTGTTTCAGAAGACTGTAGTAGTGGCCTCTTCTTTAGGCCTGCACTGCCCAAGAAACCAGAAAGAAAAAAAAAAATAAGGGTTAGCAAAGCAGGGCATTCTGATTGCCCAGAGCCGGATGAACTTGTTCCCAGTATCAAGGCCAACGCTTGAGATATCAGAGGATATACCCTGGTGGGCTAGGACTACCTCATTTCAGGTCTCCACTGATATCTCAGTACTAGCTCTCTTTGGCAAGTCTTGGCCACCTAGCCTGACATGTTTCCTTGTCTGCACACGTCCTGCAAATGGGAGTGGAGTATGAAGGATCGAGCAACAACTGCAGGAACTCTCCTGGGACACAGAGTTCTTGGCCCTCTGTGGCTGGTAGTAAATTCTGAGGCAGTTAGATAGTTGGGGGAAAGGACCTAGATTAGGGTGTAATATAAGGAGTGGCCTAAGCTTCAGCAAAAATTCCACTACTGGTACCCTAACTGCTTGTTCAATCTCAATACTGCCCAGGTCAAGAAAGCCTGGCCTACAGAGTAGGTTGTCAGATAAGATTCCAGGGCATTGGGGGTGATCAGGATTGCCTCAGCCCCTCTGCCTGGATTCTCCCTGGGGAGCTGGAAGTTTCTGAGATCCTAAATATACGTAACATTATGAAAGCCAAGAGTACCCATTCAAATGCCAGGGAAGCTTGTATGGTGAGCAGAGGGCTGGTGTTGCTTTCAACAGGCTGGACCTCAAGTATAAACAGTCTTAGAACCTGTGATTTATCTAGTGGGGTTTGTTATGAGTTGCTGGGTTTCAGGAAAGGGAAGAGGGCTGGACACTTGGCTTATGGGAGCCTTTGTTTCTTTCCTGCTCTATAG
Seq C2 exon
AGGGAAGTCACAGGTTGCCCTGAAGATCATCCGTAATGTGGGCAAGTACCGGGAAGCTGCTCGTCTAGAAATTAATGTTCTCAAGAAAATCAAGGAGAAAGACAAAGAAAATAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126:ENSRNOT00000068108:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(6.9=95.7)
A:
NA
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]