HsaINT0036468 @ hg38
Intron Retention
Gene
ENSG00000113240 | CLK4
Description
CDC like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr5:178608376-178612545:-
Coord C1 exon
chr5:178612416-178612545
Coord A exon
chr5:178608459-178612415
Coord C2 exon
chr5:178608376-178608458
Length
3957 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TTCTATTTGTTTTAAAATAGCTT
3' ss Score
5.87
Exon sequences
Seq C1 exon
AAACGTGATGAACGCACACTGAAAAACACAGATATCAAAGTTGTTGACTTTGGAAGTGCAACGTATGATGATGAACATCACAGTACTTTGGTGTCTACCCGGCACTACAGAGCTCCCGAGGTCATTTTGG
Seq A exon
GTCAGTAGACACCAGGCTTTCTAATATTATAATTGAAGAAGAGATTTTTGTTCTTTACAGCTTTACTGGTGGGGTGGGGAAGTATGATCTTCTCAGCAGGATTCAGAAAACGTTTTCTATTTTCATAAAAAATGTGTGGACATTGCTATAAATACTTTTCCTGAGTGGTAAACATGTGATACTGTCTGGGAAAGATATTCCAGGTGGTGGTTATTTTTGAACAAGTAAATCTTAAATGATCATAAGAGAACAGGCTGTGTTAGCTAAATGCATCAAAGAAATGTGATTTTGAAGTTATATGAGTACCTATTTTCATGCCATCACAAAAGCACATGGCTGGTAAAAATACTGAGGAAACTGGTTGGCAGATGTCTAGAATATAGGATGGATAAAGGTCAAGAGAAGAAAGAGGCTTCTCTAAGAGCTCCTGTGATAACCCTTGATGTGAGAAAGTCTGGGAAAGAAAATGAGTTAAGGTGCAGAGTTTTCAAATAAGAAGGGACTTATTAAGGGAGTGTTATGCCTCAACATTAAAAGTTATAGATCAGGTGTGTTAATAAATCAGGGAAGTCAGAGATTGGCTTGGGAGCTTGGAGACATTGGGAAACATTCAGATCAGGCATATCAAGAGAGTTGAATGTAATAAGCTGATTACTTAGCCTAAAGTTAGGTCCAACTGAGGTTAGATTGTAAAGCATTTTTGTGGAATCGTATTTTAATACTTTTTACTTTTTTTGTGTGTCCAACGGGACTTGGTAGTTCAGAATAGGAGTGTAAAAGCAAACTCTTGATACTTACCTAGAGTAGAGTAGTAAAGGAGTGAGGAAATCAAGAATCCTGTGCAGCTCTTGCCCACAGAACTTCCCTTGATGACGGAAATGTTCCATTTCTGCACTGTCCCATATGGTAGCCACTAGTCACTGTGCGTGACTGACTACCTTGTAGTGGGGCCAGTGTGACTGAGGAGAACTGAGTTTTGAGTTTACATTAATTTTATTTCAGATTTAAACAGCCACATGTGGCTAGTGGTTACCATATTGAACAAGCACAACTCTAGAGCTTGTCTTTTAAATGCGTAATAATAGGGTTTCTGCGTAGTACAAATTGAAAGGAGCTACTGTGTAAGGGTAAAAGAAAGCAATATGGGAAGAGATAGTGGACAGAGAGGTATTTTCAGAGATTAGAAGGCAATAGATTCCTCATTTTAAGAATCAGATTTTTCCCCAAATATTTGGCATTTTTTCTTTGTTATTGGTATATCAAACAGTGGTGCATCGTACAGTGTGCTATCCTAGATTGAGTAAAATATAGTATATAGTAACCCCCCCCTTTTTTTTTTCTTTGAGATGGAGTTTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTACCATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCGCGCGATTCTCCTAACTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACACCCGGCTAATTTTTATAGTTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTTGGATTACAGGCGTGAGCCACCGCGCCCGGCCAAGGATTTTTTTTTTTTAATTTTTATGTTTTTTATAACAGAGACAGGGCCTCACCATGTTGCACAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCGCACCCACCAGAATATGGTCAATCTTATTAATAAAGTTCCAAATGTGGCCAAGCAAGGGATAGTACAAATCTGAAATTGGAGTCCCTGGCCTTGAGGAGAAAGAATCAGGAGATTGGGAGAATAGAAAGGTCCTTTGTTTGTGGAGTGAGGATGAAGGCATAATGCAATTGGAGGGGAAAATGTAGTCAGGTGCTAGAGTTGAAGTAGGCAGTTGGCCTTATGTTGGGTATAAAAGCTAACTCATCCAAGAATGAGATGATTTAGAATGGTGTACTGCAGAAGATTACAGTCACCTGGGAAAAGACTAAATTGGGAGATAGGAGTGGTTGAAAAATAAAACTTTTTTTTTTTTTTGAGACGCAGTCTTGCACTGTCACCCGGGCTGGACTGCAGTGGCACGATCTCGGCTCACTGCAACTTCTGCCTCCCGGGTTCAAGCGATTCTCCTGTGTCAGCCTCCCAAGTAGCTGGGCTTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCACATTGGCCAGGCTGGTCTCCAACTCCTGACCTTGTGATTCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGTTGAAAAATAAAACTTTTATGAGGTCCAAGCTCTAGCATTTACGGATTTTGTATGTGTTAATAGGTAGAAACCATGCTCCATTATTTATTTATTTATTTTTTGAGACAGAGTCTCACTCTGTTGCCTGGCCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAAGTGCACACCACCACACCCAACTAATTTATATATATATATATATATATATTTTAAAATTTTTATTATTTTTTATTTTTGTTATTTGTTTATTTATTTTTTTGAGATGGAGTTTTGCTTTTATTGCCCAGGCTAGAGTGCAGTGGCGCAATCTCAGCTTACTGCAACCTCTGCCTTCCGGTTTCAAGCCATTCTCCTGCCTCAGCCTCCCAAGTCACTGGGATTACAGGCGTCTGCCACCACGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGACTGGTCTCGAACTGCCAACCTGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCATGCTCTATTATTATCCATTTGTTCAAATGACAGACACTGGAGCGGATGGTTAACAAAAATGACTTAAGTCATTATATATTGACTTGAATATATTTCTTCTTTTATCTTTAACTTCAGTGATAATGAAAGTAATTGAAATGTCTTTGAATGTAGATTTTATTTATACATTTTTTAACTAAATATTTGATCTTTGAAATATTAAAATATCTATGTGGTTGGTTCTTTCTCCTTCCCAGTCAGTATAGATTTAAGAAGGCTAGATGTTTTATTCTGATCTGAATAATACTGTCATTGAGAATTCTGAAGGAGAAAGTATATAAAATCATGTATAGACAGCGCCGATGTTTATGTATAGATCCCTCTCTGAGCTCCAATGTGTCTGTAATTTCTGCTTATAGGTGAAACTGCTTAAAATTCCCATTATACCTTTTATACAATTTGTGCAAAACGGTAATATTTCTCTTAACGGAAGAAGTAAACTCATGCATCAAGCTGATGATAATTGATAAGGCATTAGTAATTTCATTCTGAGGATAATTATAAACCTGTATTTGTGCTAATAAAATATAAAAATTCTTGGACTAACCATGAACTGAGCATAATAATGGTTTTAACAGCAGTGCTCTCCCATTATATAAACAGTTCAGAGACTATGGAATATTTGCACGAATTGGTTGTATACTTGGAAAATGGTAGCCCCCTTTTATTTTACATAACATGCACCCCTCCCTAGTTAGAATACTGTGTCTTGATGTGAGCATATGGACTATGGAGTGTGTTGAATAGCATTTGCTGTAAAACTAGAACTATAAACCCTGAATTTGGTGTCTTATTCTCCCAAATGGGTTCTGTAAAGGGAGCACTCATATAGGGAAGGATTTAATGTACTGTCAATTAAAAGTTTTTGCATAGTAAAATGTTTCTATTTGTTTTAAAATAG
Seq C2 exon
CTTTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGTTGCATTCTTATTGAATATTACCTTGGTTTCACAGTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240:ENST00000316308:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development