RnoINT0037410 @ rn6
Intron Retention
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36729626-36730895:+
Coord C1 exon
chr10:36729626-36729755
Coord A exon
chr10:36729756-36730812
Coord C2 exon
chr10:36730813-36730895
Length
1057 bp
Sequences
Splice sites
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
3' ss Seq
CCTGTGTTTGTTTTGAATAGCTT
3' ss Score
7.65
Exon sequences
Seq C1 exon
AAACGAGATGAGCGCACGTTGAAAAACACAGATATCAAAGTTGTTGACTTTGGAAGTGCGACATATGACGATGAACATCATAGTACTTTGGTGTCCACAAGACACTACAGGGCTCCAGAGGTCATTTTGG
Seq A exon
GTTAGTAGACACCAGACTTCTTATACTTCTAATTGTTGAAGTCGTGGTTAACTAAAATGAGAATACAGAGAAGAGTTTTGCATGTTTCTCCTTATGACCATGTTTATGAAAGATATTCTGAGTGCTGATTTGTGGTTCTTAATTGATCTTAACATGGTGGGTATGCTTGCTTGTGATTGTGAGGTTATGTGTCACCTGTTTTCACTCCACTGCCAAGGTAAGGCTCTAGTACAAATGCCAAGGGCCTTGTTAGCAGACCTAGACATGAAATAGAGATGGAGCAGGAGGAAAGGGAGGGACTTAAAAGCAAGAGAGTCTCTGTGTTAGCCATGATGGGAGAAAGCTGGAAGGGAAAGGTTTGGAACTTAGGGAGCATGTGTTATACCTCAAAACTTAGAAGTCACTGGTCGGATTGGGAACTTGGAAGTAGGACACATAAGGTGCTATTGTTGATACAAATCTGAAATTGGAGTCACTGGAAAAGGATCTGGAGCCTGGGGGAATAGAATTCTATTTGTGTGGGTAAAGTTCCCTAGGATGAAGGCAGATTAGAGGGAAGTTATAGTTGAATGCCATAGTAGAGAGAAAGCAGTTGCTTTAAATATTTATTAACAGTCAGGTAATATTGGGAAAGGGTGAGAAAAGTGAGATGAGGCTCCAGAGTATGAGAGTTCATTGAGGAGTGGGGTAAAGGGCTGCAGTTAGCGCCCTGAGGGTTATATTGCAGTATAATGATTGAAGAAGATGACTTGTATCTGAGCCCAAGCTCTACGTAGGGTCTACAGATGTAAATGTATTTGCTATATGTTTTCTAATGGTGAGCATTGGAGAATGAACAAGTGACTAAATCAGGGCCAGCACCAACTATAGTTTTGCCATTTATATAAGACTGAAGAAATGCTACGTTCCAGACCAGCCTGAGCTACATGCACTAAAATTTTAAATCCTGAGGTTGCTGTTGTAGTCTCTGAGGTAGACTATAAAGAGTACTGGCATGTAGGGAAGGGTGAGCAGTTTAAAGTGTTAGATATAACATGCCTGTGTTTGTTTTGAATAG
Seq C2 exon
CTTTAGGTTGGTCTCAGCCTTGTGATGTTTGGAGCATAGGCTGCATTCTTATTGAGTATTACCTTGGATTCACAGTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714:ENSRNOT00000005048:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATGAGCGCACGTTGAAA
R:
CTGAAAGACTGTGAATCCAAGGT
Band lengths:
210-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]