HsaINT0039603 @ hg38
Intron Retention
Gene
ENSG00000206384 | COL6A6
Description
collagen type VI alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr3:130641652-130642867:+
Coord C1 exon
chr3:130641652-130641714
Coord A exon
chr3:130641715-130642831
Coord C2 exon
chr3:130642832-130642867
Length
1117 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTTTTGTTTGTTTTCCTAGGGT
3' ss Score
10.08
Exon sequences
Seq C1 exon
ATATCTGCTGGGCTTCCAGGAGAGATGGGATCCCCTGGGGAACCAGGACCTCCTGGACGTAAG
Seq A exon
GTAAGTAGAAAAACTATAAACCACAGCAGGTCCTTTTCCATTAAAAAAAAAAAAGTCAGTGCATGAAATCTTCATTGTCCAAATGTGCATGCCTTCTGTCTCTGCTTCTTGGCCACTTTTTTCCCACCTTTATGGGGGAGAAAATACTGATTAAATATTTAGAGGTGAAAAAATACTGATTAAATACATCTCTTGAGAGAGAGGGGAAATTGAAGGAGGAAACCAAAAGTACTTAAACTAAAATGGTATTTCTCAATTATCATATTCTGTATCTGTTCAATCTTTCTATATGTAATAAATGATCATTGGATGAATGGAAGTGAAAGGAAATAAATAGTGACTGTGATCAATGTTGCATTCACATGGAACTTATTTGCTTCAGGAGGTCAGGGGGGGCTCTGTTGCATTTTTTTCTTGGGTGTCTCTCTTTGAAAGAAGCCAGACTCCTCTTCTTCTGAAGATGGGATTGAACACATAAGATTAAAACCAGTTCCATTTGTTCTTCTATCCCAAACTCTGACAGATTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTTTGTTTTGGGAAGGTAGTTGAGATAACCTTTCCAGATGTTCAATTGAGTCCGATCATTTTGTCAGCTAACAAATGATGGGAACAGATTAAGGTTCAGCTCTGGCTGCTGTTCAGTGGCTCAGTCAAAGAATGGGGGTTGAAGACCTTGAAACTTCTGCTATGAAAGAGGGCAACTGCACATGTGTGGCTCACTTTAGCTAGTCCTGAGGCGTAGGCGTGCTCCAGAGCTCTGCGGCAAGTGTCAGGTTGTCAGCTCCATCCTGGTAATTCTGGACAATGCTTGTTAGCCAGAGATGGACCCGGAGGAAAGCGGCCTCTCAAGGCTTGTGTGCACCAAGCTTGCTGCTTAAAGTTTGTTCTTTCCAGAATGTTACTGTTAATTAGGTAATGAGTACCTACCTGCATTCTTTTTTGCCTCTTACAATTTAATGAGAATAAAACTTTTAAAAGTTATCACTTTCTGAGGGCAATGTTGGTGCACACTGGCTACTGATGTGTATGTCTAGAGGCATTAAAACAATGTTTTGTTTGTTTTCCTAG
Seq C2 exon
GGTGTGAAAGGAGCCAAAGGCTTGGCTTCATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206384:ENST00000358511:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development