Special

ENSG00000206384 @ hg38

Biotype
protein_coding
Gene Symbol
COL6A6
Description
collagen type VI alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr3:130560334-130678155:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
110
chr3:130660170-130660279
+
5.99
35.5
0
Exon Skipping
12
chr3:130644991-130645002
+
91.13
72.13
0
Exon Skipping
494
chr3:130649069-130649562
+
84.48
68.92
0
Exon Skipping
63
chr3:130641652-130641714
+
92.04
39.15
0
Intron Retention
5890
chr3:130635762-130641651
+
7.6
26.2
0
Intron Retention
1117
chr3:130641715-130642831
+
10.63
25.6
0
Intron Retention
4066
chr3:130645003-130649068
+
5.98
22.91
0
Intron Retention
9113
chr3:130649563-130658675
+
19.78
95.07
0
Intron Retention
2864
chr3:130658773-130661636
+
9.88
46.85
0
Intron Retention
2694
chr3:130662309-130665002
+
8.17
93.55
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000043719 Col6a6 1-to-1
Mouse mm9 ENSMUSG00000043719 Col6a6 1-to-1
Rat rn6 ENSRNOG00000023007 Col6a6 1-to-1
Cow bosTau6 ENSBTAG00000012837 COL6A6 1-to-1
Chicken galGal3 ENSGALG00000011567 2-to-1
Zebrafish danRer10 ENSDARG00000079752 col6a6 2-to-1
Fruitfly dm6 FBgn0035798 frac 10-to-1