Special

ENSG00000206384 @ hg19

Biotype
protein_coding
Gene Symbol
COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:27023]
Coordinates
chr3:130279178-130395888:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
97
chr3:130377520-130377616
+
95.89
19.12
0
Exon Skipping
110
chr3:130379014-130379123
+
5.12
12.69
0
Intron Retention
7120
chr3:130318655-130325774
+
7.12
23.73
0
Intron Retention
11109
chr3:130329556-130340664
+
10.78
27.27
0
Intron Retention
5890
chr3:130354606-130360495
+
13.17
26.2
0
Intron Retention
119
chr3:130361712-130361830
+
13.58
14.78
0
Intron Retention
9113
chr3:130368407-130377519
+
12.27
22.77
0
Intron Retention
2864
chr3:130377617-130380480
+
11.98
45.47
0
Intron Retention
2694
chr3:130381153-130383846
+
13.23
93.55
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000043719 Col6a6 1-to-1
Mouse mm9 ENSMUSG00000043719 Col6a6 1-to-1
Rat rn6 ENSRNOG00000023007 Col6a6 1-to-1
Cow bosTau6 ENSBTAG00000012837 COL6A6 1-to-1
Chicken galGal4 ENSGALG00000011567 2-to-1
Chicken galGal3 ENSGALG00000011567 2-to-1
Zebrafish danRer10 ENSDARG00000079752 col6a6 2-to-1
Fruitfly dm6 FBgn0035798 frac 10-to-1