HsaINT0039604 @ hg38
Intron Retention
Gene
ENSG00000206384 | COL6A6
Description
collagen type VI alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr3:130642832-130643023:+
Coord C1 exon
chr3:130642832-130642867
Coord A exon
chr3:130642868-130642986
Coord C2 exon
chr3:130642987-130643023
Length
119 bp
Sequences
Splice sites
5' ss Seq
TCTGTACGT
5' ss Score
4.47
3' ss Seq
GTTTTATTTTCGAACTGCAGACA
3' ss Score
6.83
Exon sequences
Seq C1 exon
GGTGTGAAAGGAGCCAAAGGCTTGGCTTCATTTTCT
Seq A exon
GTACGTATCTCCCGACTACAACAGAGTGCTCTGAGTGCTCCATTCAATTTACTTATTTTTAAACCTCAGGGCCTAGCAGTTTGTTGTTTAATTGTTTCTGTTTTATTTTCGAACTGCAG
Seq C2 exon
ACATGTGAGCTCATTCAGTATGTGCGAGACCGCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206384:ENST00000358511:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development