HsaINT0040672 @ hg19
Intron Retention
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:2312]
Coordinates
chr10:101824945-101829626:-
Coord C1 exon
chr10:101829471-101829626
Coord A exon
chr10:101825128-101829470
Coord C2 exon
chr10:101824945-101825127
Length
4343 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AACCTCTCGCCTCCTCCCAGGTG
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGCCCAAACAAGCCTGGGTATCTAGTTGGCAGGAACAATGCAAATGGAGTGGACCTGAACCGCAACTTCCCTGATCTCAATACCTATATCTACTATAACGAGAAGTACGGAGGCCCCAACCACCACCTGCCCCTTCCAGACAACTGGAAAAGTCAG
Seq A exon
GTAGGAGATGAAATTTGCAAACAAAGCAGGTAAATCAGCATCTGGAATTTCTTGCAGAAAGACTGCTAAGCCATCTTTACATCAACTAAACAAGCAAGAATTAAGCATCAACTCAACTCAGTATTAACCCATCTAGAGCAATAATATATATTTCTTCCGTGTCTTTGTATTTATTTTCTCCTCAGCATAGAGCCCTCCATGGAGCACACACTAAGTGATTTTTTTTTTTTTTTAAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGTAATGGTGCGATCTCAGCTCACTGCAGCCTTCGCCTCCCAGGTCCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTAAAGATGCACACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTGACCAGGCTGGTCTCAAACTCCTGACTTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGTTAAATGTTTGATATTAGTGGTGATTGTGGTGAAGGATATGAAAGCAGTATCATTTGGTTGCATGGTTCTTAACAATTTTCCAGAATTATTTCACAGCCAGTTTCAGTTGATCATGACATCATGTGAAATGCACCAAGCAGTGTTATCCATCTCTGTTTTATAGCTATTACACTTAGAGAGAAAATAATTTACATTCTCACAGGTAGTGATTGATGGAATCGGGATGAAGATGCAGGCCTTCTGATTCTTATTCCAACATTCTTTCTACTACACTAGACTGTGGACAGAAGCATTCTATAGAGACGTCTGTCTTACTCGTGATAAGCTGTGTGCTTACCAACAATTAGCTATAGAAAGAGGCTCAGGCTGGGTGTGGTGTCTCACACCTGTAATCCCAGCACTTTGGGAAGCTGAGACGGGAGGATTGCTTGAGGTCAGGAGTTTGAGACTAGCCTGGGCAACACAGTGAGGCCCCATCTCTACAAAATAAAAATACAAAATTTAGCTGGGTGTAGTGGCACATGTCATAGACTTAGCTATTTGGGAGGATCCCTTGAAGGAGTTTAAGAGTTCAAGGTTACAGTGAACTATTGTCCTGCCTGCTCCAGCCTGGGTGACAGAGCAAGAGACCCTGTCTCCAAAACAAACAAACAAAAAAAAAGTTCAAGGAATCTAACCCTTAGTTTTCGGGACTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAGCCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATAGTGCCACTGCACTCCAGCTTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGTTCAGGGAATCTAACCCTTAGTTTTTTCTTTTCCCTTTCTTTCTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTTTTACCCTCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTTCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGATTACAGGCACGTGCCACCACCCCTGGCCAATTTTTGTATTTTTAGTAGAGACAGGGTTTTACCATGTTGGTCAGGCTGGTCTCGAACTCCTGGCCTTGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCTGGCCCCTTTTCCCCTTCTATATGACCTTTGACTACTTTATCATTACTATACCCTCCCTGATTTCCCTTACTCTTCCAATCAGAGGATCCCATTCCATATTCCTAGGCCTCACTCTCCAAGAGGCCTATAATGGAAGTCCTTGGTAATGTGAGTGGTTTCACCCTGCTGGTGGGCCTGCTCCTGAAAATAACTAGGCATTCTCTAAGCATCACTGCCACCCCTGGTGATCACGCTGTGTGGGATAGTTTGAAATGTTCTATTTGTGAATGTCTAAATTTAGAGACTGGGGAAAGAAAAGCAAAGCAGGTGTAAGCCTTTTAATTGGGAGTTTCCCAAATGGAGTATTCTGGGGTTTTTTTCTCCCTTGAAAATGAAGCAAAAGCCATGCTGACATGTTAGATTTCAAACAGCAACTATCCTCTTGGTTCAAGTAAATAGTAAATAAAAAATAACTTTGTAAGGCTGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCAGAAGCGGGCAGATCAGCTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCATCCTACTAAAAATACAAAAATTAGCCAGCTGTGGTGGTGGGCGCCTATAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATTGCTTGAACCCAGATGGCGGAGGTTGCAGATGGCATCACTGCACTCTAGTCTGGGCGACAGATCAAGACTCCATCTCACAAAAAAACCAAAACCAAAACCAAAAAGCAAAGAACTTCGTGTTAGTCAGGATATCCAACCAGAAGAATGTTCTGATGTAATAAACTTGTTTCTCTAAGTAAAATAAGGTAATTGAATCAATGATAACTAGGCTCCCACTCAATCCTCTGTCTAAATTTTAGGGGGAAAAGCAAAGAGGTTTCCCTCGCTCCTGATGGAATATCCTTGAGGAAGAGGAACAGTGAAAAGCTGGCCTTGTTCTGATAGAGGCTTAGGACACAAAGACAGAACTGCCCCAGAGGGTCTGAGCCCTGGTCACAGACCAAGACTGGTGCCCTCGCAATTATATTCATTCTGATTAAGACTCAACCCTATTTATCCAGTCCCCTTGGGATGGAAAAGATGGAGCCTGTAGAGCTGACCTTGGTCCAGAAGGAGCCATTAACACAGTAACACTACATAATCTCTAAACTTGTTCATCCTGAGAGGAGGAAAAATGCTGTAGACTGTAAATTATTTACTTACACTGCAAGTCCCAGTGGATTCAAGGCTTTCTTTGGAATATTGTCACTCACTAGCAATATAATATGCAATAGAAAGGTGGAATTTCACTGCTTAGCCAAGACTGGCCCATCTGACAGTATGTCTAACCCATGAAATTTGGATTTGACCACAGGAGTGTGTTCTACATGTCAATATTACAGCAGGGAGGAAGGAGGTTGAAAACCATCACTGTAAACTAGCATTTTTAAGATTGATTTATTGGAGTCCTAAATTTCTGCTAAGATGACTTAGAAGTCACTGGAGCAGTGGGTAAAATGGGAAACCCTTTTCTAGGGTCCAGAGAGAGGCCAAGTTGGGGCTCTGAGCTCTCCAATCATGATATCTCTTCATACAGAACTTCTCTTTTTTGGCTGGGAATGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGTGGAGATGGGCACATTGCTTGAGGAGCTCAAGACCAGCCTCAGTAACATGGCAAAACCCCATCTCTACAAAAAATACAAAAATTAGCCAGGTGTGGTGTTGCATGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGTAGGAGGATCGCTTGAGTCCGGGAGGTGGAGGCTGCAATGAACTGAGATTGCACCACTGCACTCCAGTCTGGGTGACAGAGTAAGATCCTGTCTCAAAAAACAAAACAAAAAAAAAAACTTCTCTCTCTCTCTCCCTTTCTCTCTCAACAGACTTTATTTTTTAGGGTAGTTTTAGGTTCACAGCAAAATTGAGCAAAAAGTACAGAGTTCTCATATACTCCCCACCCCACTCCACCCACCCCACCATCAACATCCCACCCCAGAGGGGTGTGTTTATCACAGTCAGTCATGAACCTACCTTAACTCACCATGAGCGCTCCCAGTCCATACTTACCTTACTGCTCTCTTGGTATTGTGCATTCTATGGGTCTCAACAAAGGTATGATGATATATAGCCACCATTATGGTATCATACAGAATAGTTTCCTTGCCCTAAATGCTCTCTCTTTACCTCTTTTGTATATTGGGATTCCACATAAGATTTCATTTTGAAAAAAGTTCTATACACGCCATTGTTGAAACCATCATTCCAAAGGTCAACATTTCCCCATCTCCACTTTTCATATCCGCCAGGACGCTCAATGTTTCATTCAGACATTTTATCTCCTCAGGCCACTTCCTGACAGACTTACTCTAACCGCCGTTTGTTTGGTAGCCCCAGTTGGCCCTTCACCGCCAACCTCTCGCCTCCTCCCAG
Seq C2 exon
GTGGAACCCGAGACCCGGGCGGTGATCCGGTGGATGCACTCCTTCAACTTTGTTCTTTCAGCCAATCTCCACGGAGGGGCGGTGGTGGCCAATTACCCGTATGACAAGTCCTTTGAGCACCGGGTCCGAGGGGTCCGCCGCACCGCCAGCACCCCCACGCCTGACGACAAGCTCTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054-CPN1:NM_001308:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(17.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=PU(38.6=98.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)