BtaINT0043212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023941 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr26:20846052-20851563:-
Coord C1 exon
chr26:20851408-20851563
Coord A exon
chr26:20846235-20851407
Coord C2 exon
chr26:20846052-20846234
Length
5173 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAGCTCTCATCTCTCCTCAGGTG
3' ss Score
8.7
Exon sequences
Seq C1 exon
GAACGGGACATCTCTGGGTATCTGGTTGGCAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCCGATCTCAATACCTACATCTACTACAATGAGAAGAACGGAGGCCCCAACCACCACTTGCCCCTTCCAGACAACTGGAAAAGTCAG
Seq A exon
GTATGAGATGAAATTTGCATGCAGAAGCAGGTAAATCAGCATCTGGCATTTCTTCTCTCGATCTTCACATCAACTAAACAAACAAGAATGAAGCAACAACGCAAGTCTGTGCTAATCTATCCTGAGCAGTGCTGACCATACTGTATGCCTCTTGGTATTTCTTGCCTCCCTGAGCATAGAGCCCTTCACTGAGCACAAGATGTTTGATATTAGTGGCGAAGGAGGTAAAACTGGTATCGTACTGTTGCACTGCACTTTACAATCTTAAAGAACTCTTTCTCAGCTAGCGTATCATCAAAAACTATGGTAAATGCATCAGGCAGTGTTATCCATCCCCATTTTATAGATATCACTTATAGAAAAAAATAAACTCACACAGATAGCAACTGATAGATTCAAGACTAAAACCTAGGTCTCCTGACTCCTCATCCAACATTCTTTCTATGGCACTATCCTGTCGACAGAGGACTGTAGGATTCTAGAGAGGAATCTCTCTTGCATGTGATGAACTGTGTGCTTATCAACAATTAGTGATAGAAGGAGGTTCAGGGAGTCTCACCCTTAGAAAAGAAGCTTTTCTTCTTCTCTCTCTGTATGCCATTGACTACTTTACCATATTCTCATTTCCTTTTTTCAACCAAAGATCACATTTGATACTCCCAGGTCTCTCACCTCTTCGTATTAGAAATGGTTCCATCCTAATGGTTGGCCTGTTCCTGGGAATGACTGTTGTCATCCTCGGAGTATCATCACCACCCTGTTTCTGACACTGTATGGCTTAGTTCTAAACATTCTCTTTGTGAATATCTGAGCTTAGAGACTGGGGAGAGAAAAATAAAGCAGATATAAGGCCTTATATTGGAAATTGCTAGATGAATATTACCAGTTTTTTCCCACTGGAATTGAAGCAAAAGTTATGCTGACATGTTTAGACTTTGGATAGCAGCTATGCTCTTGGCTCAAGTAAATAATAAATAAAAAATAACTTTGTATTTGTCATATTCAGTCAGAAGGATGCTCAGATTTATTAAACTTGTCTACATGAAGTAAAGTAACTGAGCCAGTAATAATTAAACTCCACTGGCTCCTCTGTCTGCAGCTTAGAAGGGAAAAAACAATGAGAAGTCTCTCACTCTTGATGGGACAGCCTAAAGGGCCAGGAACATGAGAGGCTGGCCTCCTTCTGATGCATGGAGGCTTAGGACATGGAGAAAGGACTGCTTTAAAGCATCTGAGCTGGTCACAGAGTTGGACTGGTTCCTCTGGGATTATATTCACTCTGATTGAGTGGGGCTCAACATTATTCATTTGGTCTCCTTGGGAATAGAAAAGATCAGAACCTTCACAAGAGACCCTTGATCCAGGAGGAGTCATTAACACCACATAACTTCTAAGCACATCCATCTGGAGGGGAGGAAAAACTGTGAAGACTATAAATTATTTACTTACACTACAAGTCCAGTAGATTCAAGGCTTTCTTTAGAATACTGTCACTCACTAGCAATATAATTTGTAGTACCAAGCATGGACTCTCATTAATTAGACAAGACTGGCCCATATTACAGTATATCTAATTTATGAAATTTGGATATCAGCAAACTAAAGTGGACTGGAATGGGTAACTTTAACTCAGATGACCATTATATCTACTACTGTGGGCAAGAATCCCTTAGAAGAAATGGAGTAGCCATCGTAGTCAACAAGAGAGTTTTAAATGCAGTAATTGGATGCAATCTTAAAAATGACAGAATGATCTATGTTCGTTTCCAAGGCAAAACATTCAATATCATGGTAATCCAAGTCTATGCACTGACCAGTAATGCTGAAGAAGCTGAAGTTGAACAGTTCTATAAAGACCTATAAGACCTTCTAGAACTAACACCCAAAAGAGATGTCCTTTTCATTATAGGGGATTGGAATGCAAACGTGGGAAGTCCAGAAATACCTGGAGTAACAGGCAAATTTGGCCTTGGAGTATAGAATGAAGCAGGGCAAAGGCTATTAGAGTTTTGCCAAGAGAACACACTGGTCATAGCAAACACCCTCTTCCAACAACACAAGAGAAGACTCTGCACATGAACATCACCAAATGTTCAACACTGAAATCAGATAGATTATATTCTTTGCAGCCAAAGATGGAGAAGCTCTATACAGTCAGCAAAAACAAGACCAGGAGCTGACTGTGGCTCAGATCATGAACTCCTTACTGCCAAATTCAGACTGAAATTGAAGAAAGTAGGGAAAACCACTAGACCATTCAGGTATGACCTAAATCAAATCCCTAATGATTATACAGTGGAAATGAGAAATAGATTTAAGGGCCTAGATCTGATAGATAGAGTGCCTGATGAACTATGGATGGAGGTTCGTAACATTGTACAGGAGACAGGGATCAAGACCATCTCCAAGAAAAAGAAATGCAAAAAAGCAAAATGGCTGTCTGAGGAGGCCTTAAAATTAGCTGTGAAAAGAAGAGAAGCTAAAGGCAAAAGAGAAAAGGAAAGATATACCCATTTGAATGCAGAGTTTCAAAGAATAGCAAGGAGAGATAAGAAAGCCTTCCTCAGTGATCAATGCAAAGGAATAGAGGGAAACAATAGAATGGGAAAGACTAGAGATCACTTCAAGAAAATTAGAGATACCAAGGGAACATTTCATGCAAAGATGGGCTCGATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGGTATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATCTTCATGACCCAGATAATCACCATGGTGTGATCACTGACCTAGAGCCAGATATCCTGGAATGCGAAGTCAAGTGGGCCTTAAGAATCATCACTACGAACAAAGCTAGTGGAGATGATAGAATTCCAGTTGAGCTATTTCAAATCCTAAAAGATAATGCTGTTACAGTGCTGCACTCAATATGACAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCTAAGAATGCTCAAACTACCACACAATTGCACTTATCGCACACACTAGTAAAGTCATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACCGTGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCACAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATACCAAAGCCTTTGACTGTGTGGATTACAATAAACTGTGGAAAATTCTGAATGAGATGGGCATACCAGACCGCCTGACCTGCCTCTTGAGATACCTGTATGCAGGTCAGGAAGTAACAGTTAGAACTGGACATGAAGAACAGACTGGTTCCAAATAGGAAAAGGAGTACATCAAGGCTGTATATTGTCACCCCGCTTATTTAACTTATATACAGAGTACATCATGAGAAACGCTGGGCTGGATGAAACACAAGCTGGACTCAAGATTGCCGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAACATGAAGAAGAACTAAAGAGCCTCTTGGTGAAAGTGAAAGGGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCCAGTCCCATCACTTCATGGCGAATAGATGGGGAAACAGGGGAAACAGTGGCAGACTTTATTTATTTATTTATTTTTTTGGCTCCAAAATCACTGCAGATGGTGAGTGCAGCCATGAAATTAAAAGATGCTTACTCCTTGGAAGAAAAGTTATGACCAACCTAGACAGCATATTAAAAAGCAGAGATATTACTTTGTCAACAAAGGTCCATCTAGTGAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTAAGAGTTGGACTATAAAGAAAGCTGAGCACCCGATACTTTCAAACTGTGGTGCTGGAGAAGACTCTTGAGAGTCCCTTGAACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGAGTGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTAATGTGAAGAGCTGACTCATTTAATAAGACCCTGATGCTGGGAAAGATTGAGAGTGGGAGGAGAAGGGGACAACAGAGGATGAGATGGTTGGATGGCATCACCGACTCAATGGGCATGAGTTTGAGTAAACTCTGGGAGTTGGTGATGAACAGGGTGGCCTGGCATGCTGCAGTCCATGGGGTCGCAAAGAGTCAGATACGACTGAGCAACTGAACTGAACTGAACTGACAGGAGAACATTCTACATGTTGACATTACAGCAGATGTGTTGGGAGTAGGAAGAGGTTGAAAATCATTGTTGTAAACCTGTAATTTTCAGACACATTTATTAAACTCCAAATTTCTGCAGCTCCAGAAGCTACTGGAAAAGTGGGTAAGTTGAAGAACCCTTTCTTTGTTACACAAGAGAGGCCAAATTGGAATTCTGAGTTCCGAAACCCTGTGCTACTCCTCTTCAAATTGCTCTTTTTCCTCCTTTCTCCCCCTTTTTTATTTAAGAGACTTTATTTTTTTTTTAAGGAATTTTAGGTTCACAGCAAAATTGAATGGAAAATATAGAATGGTACCACATATTCCCTGCTTCCCATTATCAACATCTCCCACCAGAGTGGTACATTTATTGCAATGATGAACCTACATTGACTTGTCATCATTACCCAAAAATTCATAGTTTCCATTAGGGTTCACTCTTCATGTTGTATCTTCTGTGGGTTTTCACAAACGTATCATGACATTTATCTACCATTTTGCATCATGCACAATAGTTTCACTGCCCTACATGATGTCTTTTTAGCTATTTTTAATAGTGGGATTCCACATGAGATTTCATTTTGAAAGTGTTCCATTCACCTAATTTGTTACACTGTCAAGCAAAAGATCAAAATTTCCCTGTCTGCACTTCTTATATCTGGTAGAACTCTCTTTGCTTTATTCAGGCATGCCATCCTCTCAGGCCACTTCCTGTCAGACATGCCATCCTTTCAGGCCACTTCCTGACAAAACTCATGTGAACAGCCATCTGGCTTTAGTTGTAGCTTCACCACCAAGCTCTCATCTCTCCTCAG
Seq C2 exon
GTGGAACCCGAGACCCAGGCTGTGATACAGTGGATCCGATCCTTCAACTTTGTCCTTTCAGCCAATCTCCACGGAGGGGCAGTGGTAGCCAATTATCCATATGACAAGTCCCTTGGGCACCGGGTCCGAGGTTTCCGCCGCACTGCCAATACCCCCACGCCTGATGACAAGCTTTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023941:ENSBTAT00000032932:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(16.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]