HsaINT1008330 @ hg38
Intron Retention
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N subunit 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr10:100065188-100069869:-
Coord C1 exon
chr10:100069714-100069869
Coord A exon
chr10:100065371-100069713
Coord C2 exon
chr10:100065188-100065370
Length
4343 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AACCTCTCGCCTCCTCCCAGGTG
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGCCCAAACAAGCCTGGGTATCTAGTTGGCAGGAACAATGCAAATGGAGTGGACCTGAACCGCAACTTCCCTGATCTCAATACCTATATCTACTATAACGAGAAGTACGGAGGCCCCAACCACCACCTGCCCCTTCCAGACAACTGGAAAAGTCAG
Seq A exon
GTAGGAGATGAAATTTGCAAACAAAGCAGGTAAATCAGCATCTGGAATTTCTTGCAGAAAGACTGCTAAGCCATCTTTACATCAACTAAACAAGCAAGAATTAAGCATCAACTCAACTCAGTATTAACCCATCTAGAGCAATAATATATATTTCTTCCGTGTCTTTGTATTTATTTTCTCCTCAGCATAGAGCCCTCCATGGAGCACACACTAAGTGATTTTTTTTTTTTTTTAAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGTAATGGTGCGATCTCAGCTCACTGCAGCCTTCGCCTCCCAGGTCCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTAAAGATGCACACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTGACCAGGCTGGTCTCAAACTCCTGACTTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGTTAAATGTTTGATATTAGTGGTGATTGTGGTGAAGGATATGAAAGCAGTATCATTTGGTTGCATGGTTCTTAACAATTTTCCAGAATTATTTCACAGCCAGTTTCAGTTGATCATGACATCATGTGAAATGCACCAAGCAGTGTTATCCATCTCTGTTTTATAGCTATTACACTTAGAGAGAAAATAATTTACATTCTCACAGGTAGTGATTGATGGAATCGGGATGAAGATGCAGGCCTTCTGATTCTTATTCCAACATTCTTTCTACTACACTAGACTGTGGACAGAAGCATTCTATAGAGACGTCTGTCTTACTCGTGATAAGCTGTGTGCTTACCAACAATTAGCTATAGAAAGAGGCTCAGGCTGGGTGTGGTGTCTCACACCTGTAATCCCAGCACTTTGGGAAGCTGAGACGGGAGGATTGCTTGAGGTCAGGAGTTTGAGACTAGCCTGGGCAACACAGTGAGGCCCCATCTCTACAAAATAAAAATACAAAATTTAGCTGGGTGTAGTGGCACATGTCATAGACTTAGCTATTTGGGAGGATCCCTTGAAGGAGTTTAAGAGTTCAAGGTTACAGTGAACTATTGTCCTGCCTGCTCCAGCCTGGGTGACAGAGCAAGAGACCCTGTCTCCAAAACAAACAAACAAAAAAAAAGTTCAAGGAATCTAACCCTTAGTTTTCGGGACTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAGCCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATAGTGCCACTGCACTCCAGCTTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGTTCAGGGAATCTAACCCTTAGTTTTTTCTTTTCCCTTTCTTTCTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTTTTACCCTCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTTCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGATTACAGGCACGTGCCACCACCCCTGGCCAATTTTTGTATTTTTAGTAGAGACAGGGTTTTACCATGTTGGTCAGGCTGGTCTCGAACTCCTGGCCTTGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCTGGCCCCTTTTCCCCTTCTATATGACCTTTGACTACTTTATCATTACTATACCCTCCCTGATTTCCCTTACTCTTCCAATCAGAGGATCCCATTCCATATTCCTAGGCCTCACTCTCCAAGAGGCCTATAATGGAAGTCCTTGGTAATGTGAGTGGTTTCACCCTGCTGGTGGGCCTGCTCCTGAAAATAACTAGGCATTCTCTAAGCATCACTGCCACCCCTGGTGATCACGCTGTGTGGGATAGTTTGAAATGTTCTATTTGTGAATGTCTAAATTTAGAGACTGGGGAAAGAAAAGCAAAGCAGGTGTAAGCCTTTTAATTGGGAGTTTCCCAAATGGAGTATTCTGGGGTTTTTTTCTCCCTTGAAAATGAAGCAAAAGCCATGCTGACATGTTAGATTTCAAACAGCAACTATCCTCTTGGTTCAAGTAAATAGTAAATAAAAAATAACTTTGTAAGGCTGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCAGAAGCGGGCAGATCAGCTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGTGAAACCCCATCCTACTAAAAATACAAAAATTAGCCAGCTGTGGTGGTGGGCGCCTATAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATTGCTTGAACCCAGATGGCGGAGGTTGCAGATGGCATCACTGCACTCTAGTCTGGGCGACAGATCAAGACTCCATCTCACAAAAAAACCAAAACCAAAACCAAAAAGCAAAGAACTTCGTGTTAGTCAGGATATCCAACCAGAAGAATGTTCTGATGTAATAAACTTGTTTCTCTAAGTAAAATAAGGTAATTGAATCAATGATAACTAGGCTCCCACTCAATCCTCTGTCTAAATTTTAGGGGGAAAAGCAAAGAGGTTTCCCTCGCTCCTGATGGAATATCCTTGAGGAAGAGGAACAGTGAAAAGCTGGCCTTGTTCTGATAGAGGCTTAGGACACAAAGACAGAACTGCCCCAGAGGGTCTGAGCCCTGGTCACAGACCAAGACTGGTGCCCTCGCAATTATATTCATTCTGATTAAGACTCAACCCTATTTATCCAGTCCCCTTGGGATGGAAAAGATGGAGCCTGTAGAGCTGACCTTGGTCCAGAAGGAGCCATTAACACAGTAACACTACATAATCTCTAAACTTGTTCATCCTGAGAGGAGGAAAAATGCTGTAGACTGTAAATTATTTACTTACACTGCAAGTCCCAGTGGATTCAAGGCTTTCTTTGGAATATTGTCACTCACTAGCAATATAATATGCAATAGAAAGGTGGAATTTCACTGCTTAGCCAAGACTGGCCCATCTGACAGTATGTCTAACCCATGAAATTTGGATTTGACCACAGGAGTGTGTTCTACATGTCAATATTACAGCAGGGAGGAAGGAGGTTGAAAACCATCACTGTAAACTAGCATTTTTAAGATTGATTTATTGGAGTCCTAAATTTCTGCTAAGATGACTTAGAAGTCACTGGAGCAGTGGGTAAAATGGGAAACCCTTTTCTAGGGTCCAGAGAGAGGCCAAGTTGGGGCTCTGAGCTCTCCAATCATGATATCTCTTCATACAGAACTTCTCTTTTTTGGCTGGGAATGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGTGGAGATGGGCACATTGCTTGAGGAGCTCAAGACCAGCCTCAGTAACATGGCAAAACCCCATCTCTACAAAAAATACAAAAATTAGCCAGGTGTGGTGTTGCATGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGTAGGAGGATCGCTTGAGTCCGGGAGGTGGAGGCTGCAATGAACTGAGATTGCACCACTGCACTCCAGTCTGGGTGACAGAGTAAGATCCTGTCTCAAAAAACAAAACAAAAAAAAAAACTTCTCTCTCTCTCTCCCTTTCTCTCTCAACAGACTTTATTTTTTAGGGTAGTTTTAGGTTCACAGCAAAATTGAGCAAAAAGTACAGAGTTCTCATATACTCCCCACCCCACTCCACCCACCCCACCATCAACATCCCACCCCAGAGGGGTGTGTTTATCACAGTCAGTCATGAACCTACCTTAACTCACCATGAGCGCTCCCAGTCCATACTTACCTTACTGCTCTCTTGGTATTGTGCATTCTATGGGTCTCAACAAAGGTATGATGATATATAGCCACCATTATGGTATCATACAGAATAGTTTCCTTGCCCTAAATGCTCTCTCTTTACCTCTTTTGTATATTGGGATTCCACATAAGATTTCATTTTGAAAAAAGTTCTATACACGCCATTGTTGAAACCATCATTCCAAAGGTCAACATTTCCCCATCTCCACTTTTCATATCCGCCAGGACGCTCAATGTTTCATTCAGACATTTTATCTCCTCAGGCCACTTCCTGACAGACTTACTCTAACCGCCGTTTGTTTGGTAGCCCCAGTTGGCCCTTCACCGCCAACCTCTCGCCTCCTCCCAG
Seq C2 exon
GTGGAACCCGAGACCCGGGCGGTGATCCGGTGGATGCACTCCTTCAACTTTGTTCTTTCAGCCAATCTCCACGGAGGGGCGGTGGTGGCCAATTACCCGTATGACAAGTCCTTTGAGCACCGGGTCCGAGGGGTCCGCCGCACCGCCAGCACCCCCACGCCTGACGACAAGCTCTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054:ENST00000370418:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(17.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=PU(38.6=98.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains