HsaINT0041111 @ hg19
Intron Retention
Gene
ENSG00000203710 | CR1
Description
complement component (3b/4b) receptor 1 (Knops blood group) [Source:HGNC Symbol;Acc:2334]
Coordinates
chr1:207669473-207679428:+
Coord C1 exon
chr1:207669473-207669733
Coord A exon
chr1:207669734-207679248
Coord C2 exon
chr1:207679249-207679428
Length
9515 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
TCTATGGTCTTGATCTCCAGGTC
3' ss Score
8.67
Exon sequences
Seq C1 exon
TTTTGTCCCGGAACCCCGCAGCCCTCCCCACACTCTGGGCGCGGAGCACAATGATTGGTCACTCCTATTTTCGCTGAGCTTTTCCTCTTATTTCAGTTTTCTTCGAGATCAAATCTGGTTTGTAGATGTGCTTGGGGAGAATGGGGGCCTCTTCTCCAAGAAGCCCGGAGCCTGTCGGGCCGCCGGCGCCCGGTCTCCCCTTCTGCTGCGGAGGATCCCTGCTGGCGGTTGTGGTGCTGCTTGCGCTGCCGGTGGCCTGGG
Seq A exon
GTGAGAGGCGGGCGGGCGTGGGGAGGCGCCCGGGCGGACGAGGAACCCGGGGCCCCGCAGAGAACTCGCGTGCAGCGCTGAGCTGCGCTGCTCTGCGCGCCCGGGTCCGAAGGCAGCGCGATGGGTGGGCTGAGCGCGCGACCCGGCAGGGCGGCGGGTGTAGGATCCTTCTGCGCACTGGAGACCCTCGCTGCTTCTGGGTAAGCGTGGAGTTCCCAGGTGCAGGGGCTTAAGTCGTGACGAGCGCAGTGGAAGGCGCAGATGCTGAGCGGGTGCCGCACGAAATTCCTTGCCTTTGTGTATTCACAGCCTCGGCTGGCTATAGCCAAGACGTGGCGTTGATCCTAGTGAAAGGGAACTTGGGGATCCGACAAACCTGAGTTCTGGTCCTAGAAACTTAACTGTGAGGCAACTTAGCACACCTGAGTCTGTTTGCTCTTCTGTAAAATGGGGACACTGGTATCTCTGCATCGTGGAGTTGCTGCCTCAGTGGCATTAAGCCTGTCGAGTATCTAACACAGGGCTATGTGTCCCCGAGTCCATTTCTATCCCCCAACCGTTACCTCTGTACTTTGCTCCCAATGGTGTTTAGACAAGCAGTCCTAGGGATGCAGGTGTTACCTGACAACTGCCCCGCATGGAACTGTCCTCGCCCCCCACACCAAGCCACCACGGCCATCATCACCATGCACTTAATTGACAGCATACTTTAAGACAGATGCATGCCAGGCACTTGCGGATTAGAAGAGCAAGGGAAGCCCCAGAACATGCAATGTAACCGTTGCAGGTAGAAGGGACAGTAGATATGTTTACAGTTCGCATTTTAGTGATGTGTTTAGTACAAAATAACGCCTATTATAATTATTATGGAAATTTTGAGGCCACATCTCTTCCTTTTTCTTAACTTCAAATAGGTAAACATCTTCAGTTAGAACCCTTCTATTATTATTTTTCGGCTCCCCAGAAGTCTTCTTGGTTGCCTAGACTCACTGGCAACATCTCATTTGAAGTGACAGTCTTGGTTGTTTTTGTCCAGCCTATTCCTGACAACTCCGGGTTCGCCCTTCTCTGCCACTAGACATTTTACATTCATTATTTGAGTGTTCCTTCTTCTCTAAAAGAGTAAATAAAATAAAATAAAGTAGAACCAAGTCCCGCAAGAGTTGTTATTAATATTTGATCTCCTTAGGCACCAGAAAGTAACCTGTCAGGTGCAGAGATGTGATAAAACGTACAATCTTATTTTTAGGAGAGAAGCATGCCCAGTAAGTTAAGCAATCTGTTGTCAACGCTTAGGAATTTGTGTCATCTTTGGGAGTACTGGCCCTCTTCTTACTAGAATGTTGTTTTACTTAGCCTATGTTGATTAAGTTACTGTTATAAACAATCCCAGACACTATTAATTGCAAAAAAAAAATTTACTGAGGTTATCACAATAACTTCCAAATGTGAAACAGCCTAAACTAAACTACCTAGAAATTTTGTTGCTGACATAATTTAAATTTTAAAATGCTGATGGATGCTTCCAGTGTGCACGGTCCTTTGGAATTTTAAAGAAGTATAAGAGCTCTGCACCCAAAGTGTATGCATATAGAAGTAGGTGGTGGAGTTTTATGAAATCTACTTATTAGGAAGCCAGCGTTCTGCTTTTTCCAGCCTCTGCTACTTACCAGCTGGTGTCTTGGACCCAGTAAGTTAAGTCACATCACTGACCTTCAGTGTCCACATGTATAAAATGAGCACAACTGACATCCTGATCTCTGAGAGAGACGTTTTGAAAATCAGATGGTGTAATGCATGTGACAGTGTTTTGTAATCTGAAAACCCCCATGCATGTCTGAAAAACCATGACTAAGAAGTCGTGCAAGACTGCAGGATCACCGAAAAGCGAGAAATCTCAACTCCTATGATCAGGAAAGGATGAGTGAAAGGTATATGGCTTTACTAGCACTTAAAGAGTGAATCTAGAAACAGATTGCATACGACAAAAAATAGCAGAGGAGCTAGGATTGTTTTGTTATTATGAGTTACTCACAGTACCCGTAAAGTGGTATAGTGCTATTTGAAAGAGGACTTAGATTAGCTGCAAATAGATATTGCAAATGTAGGACAACCCCTGAAAAATGTGAAAAAAAGAACTATAATTTATATGTTAATAAGTAAGAGAGAATTGCATCATATAAAATGCTCAGTTAAAACAATAAAGATGGCTGGGGACAGTGGCTCATGCCCATAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTCAAGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCTGTCTCTACAAAAACACAAAAATTACCAGGGCATGATGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCATGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGTCGAGATCGTGCCATTGCACTCCAGCCTGGGTGACAGAGCGCAACTCCAAATCAAAAAAAAAAAAAAAAGAAACAAACAAACAAAACAAAAAACAATAAAGGGCAGGAAAAGAATGGAAGACAAAAAATAGAAACAGAGAACAAGAGAAAAAAAGCAACAAATAAAAACCAGTAACAAAACTAAAGCAACTATATCAACAATCATTTTGAGTGTCAATGATCGAAATGCACCATTTGAAACAGATCATCAGAGTGGATCAAGAAACAAGACCCAACTATATACTGTGTACAACAAGACCGTTTTAAATATAGACAATATATATGAAAAGTAAATGGATAAAGATATACCATGCTAATGCTAGTCACAGAAAGCAGGAATAGCTGTGTTAATTTCAAACACAGCAGACTTCAGACCAAGAAAAATTATTAGGGATAAAGAGGGGCATCATATAATGATAAAGGGGCCAATTATCCAAGAAGACGTAACAATATCCCATATGTATGCACCTGATGGAGAGACAAAATACGTGAGGCAAAACCCATAGAACTGCAAGGAGAAATAGATGGATTTACTATCATAGTTGGAGACTTCTATGATATCTTTCTGATATCAGAAAAGGTGCTGAAGTCTCCTTATCAGAAATGGGCAGATTCAGCAGGCAGAAAATCCGTAAGGACATACTTGAATTCAACAGCACCATCAATCCACTTGGGTATAATTGACATATATAGATGACTTCATCCACAACAGCAGAGCACATATTCTCCCGCTTACATTCATGGGGATAGACCACATTCTGAGCCATAAAATAGTACACGAATTAAGCTTTACCAGGCAGTGTTTAATATAGGGTGGACTCTGGCGCCCTCACGTGGTCCTCATATAGGATCTGGTTTGGTTATCCCTGCTAGGTAAAGGTGCAAGATAGAAGGGAAGTTCCAATTTGCTTTCTGTGCTTTGTGGTGTATTTTGGTTTACATATGCTCAGATGAGTGGATGTGTGATTTATATTATCTATTTTAATCTAAAATAAGCTTCACATTTGGACAGGTAACATCAAAAGTGTCCTACACAGAAATGCTGGGTGAAGATCCCAGTAATAAAACCAACTCCAGAAAACAAGAAAATGGTAGAGTTGACAATCCCTCTCACCCTCTCCGCAAAGACACATGTATACACATTTTTTGTCAGAGGCATTAAGTAGAAGAAATGCTGTCAGTCTAATCACAACTGATCACAACTCGATGAAACCAAAAAACCTAGAAAGTATCATGAAGACTGTCGAAATAAGCTTTACATTCACTATTGTGAACAGAGAGACTCAATGTGACTGTTTTTTGTCCCGTTAGATGTTAGCTAATGATTGTGCTAAGTCATGATGATTAACAAAGCATTTAAAATATTTATTTTATCTGTGTTACATTTCAAAAATTTATATTGAGGCATATAATTTATGTTCGTGTACATATATAATTTATAAATTTATATATTTGAAAGGGCATGCTCTTTTTTTAAACTGATAGAGGTGCCTAAGCAAAGCAAGTGCAAATCTATTCCTTAAAGGGTAAGTATGCAGAATGGAAAGCAGAGTGTTCTTTGGGTTGACAGCTCATATTGCAACAGACATGAAAGTGATGATGTGTTAATTGTGCATATAGCACAGAATACATCAACTTGCTTTGAATGGAATATCTGAACCAGGAGAATGTGAAAGTGGGCTGAGTCATACAAGACAAAACCCGAAATGAGATAACAATACATACCCACTAGAATGACTAAAATGAAAAAGATTGACCGAGCCAAGTGTTGGCGATAAGGTGGAGTAACTGGAATTATAATATACTGCTATTTGGCAGGTAAAATTATAACATTAACTTTAGAAAATAGTTCAACAGATTCTTAAAACCTTAGACACACACTCAACATTTTACTCTTAGGTTTTTACCCAAGAGAAATGAAATCATATGTCCACACAAAGACTTGTACATGAATTTTCATAGCAGTTTTGTTTGTAATAGCCAACACGTGGAAACAATCCAAATGTCCCTCAACAAGTAAATGGATAAACTAAATTAAGATATATTTATGCAATTGAATATTACCCAGCAACTAAAGGAAACAATTTGTATACATGCAGCAACCTAGATGGATCTCTAATTATGCTGTGTGAAGGCTAAACCATAAAAAAAAACCTGAGTGATTTCCTTTATACAATAGGATATAAATGAAGTGATTTAGGTTATATGAAATTTTAGAAAGTCAAATCAATCTGTAGTAAGAGAAAACCACCTGAGTTATTTCCTTTATATGATAGGATATAAACGAAGTGATTCGGGTTATATGAAATTTTAGAAAGTCAGATCAATCTGTAGTAAGAGAAAACACATTGAAGGTTGCCTAGAGAAGGAAGTGGATGTTTGGATGGATTACAGAAGGGCATGAGGGAACTCTGTGTGGGTGGGATGTATGATGGAAACGTTTATTGTCTTCATTTTGGTGATGGTTTCACAACGCATACATATGTTATAAGTAATCGAATTGTACACTTCAAATACTCATCAATCATTGTATGTAATATATCTTGATAAAGCTATAAAAACTTTTAAAATTATGGTAGGTCTTCAGTTTGTGGATTTTATATTAATATATTTGTCATAGGAACTAGTCACAATTGAGGGATTGGTAATAAAGGAGAGAAAGGAAACTACATCAAGCTTTCTTTGTTGAAGGCTCATATATTCCTTTTTTGAGCTATTATACAACTTTGCTTTTTATAATTACCTATACTATTCATATACTACTATGCAGGTAAGAATATTATGTAATTAAGGGGAAGGAACTTCTTTCCAAGAATGGTTCATTCAATTTGCTTTGTTACTTTAGGTCTCATTCCTTCCTCTCGTTGCAAGCTTTGCTGTGACATTTACCCTCTCTCAATACAGCTTTTGGCGCTAGGCACTTCACATGGAATCTCTTCCTTTGTCCGGCATCAATGGATAAGACAAATATCAAAATTGTATTTCATCCCACATATCAACTAGAGGAAAGGTGAATGCATAACACTGAAAATAACAGCAACTGTTTTACTCAGTGTTTTTTTTTTTTACAGTATCCTCAAAGTGCTGTTATCTATCAAAATCAGCTGTGAAAATTTTTAAAAATAGACTCCTGGGCCCTAACCTAGACCCACTAAATCAGAGATTTGGGGGACATAGCTTGGATTCTTGATTTTTTTGAGTTTTATAAGTAATTCTTCATTTTTTGTTCATTGCAACAAATATGCATTGAGTTCTTATAATTGAGTGTTAAGCACCAGGACTAAGTATTAATTTAGAGGTACAAAAAAACACATCATCTCTTGCCTTTAAATTATGCATATCTAATATCTATTGAGAGAAATAGATACTTCTAAAAGCACACAAAGATAAAAAGCACAAATTGTAATAACAAACAATTATTGATATGAAAGGAAAAGCAAAGTGTCGGACTAGAAATTATTATAGGGTGGGGCAGAGGGAAGTAGTTTAGATTCCAAATCCCTAAGAGGGTCAGGGAAGGCTTCAGATGAGATTGGGTGTGTTCAGGGTGGTATGGCCATAGGCAGGCTGGGGAAGGCTTCTATAAGAAAGTGACATTTTAGCAGATGCCTGAAGGAAGAATTGAAGTCAGAGTGAAGATAAAATTGCGTCACATAGAAGGAATGTCATAGACGGGAAAAATGTGTGTCTTTGGGAAACTGAAAAAGGGGAAAGGGCCACACCTTGGTGAGGGGACCAAGTGGCACAAGATGAGGCAGGGAACATAGACAAGGGCTTCCTTGCTTAACAACTGCTGGCTTAATAAAGCAAATGTGTGATGATGGATACAGGCTGTCTGGGAAAAATAAGTAAGAAATATGAGCTTTCTTGGAGCATCATCCTTTGCTTCAGTAGAAAGCACAGAGTTAGGCTTCCAATTCTGACTAAAGCCATTGACAACAGGGAAAAGGCAACCTTAGGAATTCTCCTCTCTGTCCGGGGTCCCGTGGGCACTATGATGGAGCTCATGAGATGCAGATGAGAAGTCCCAGGCTGAATCCGGGGCACATTCACTCAGGAGAGCTGAGGTCACCAGTCACTGAGGTCATCCAGTGCATTCCCGACAGCATAGGCTCATTCCAAGCTAGTTCTGCAAAGGAGCAGAAAATGAACTCTTGGAAGCAAAGCAAGCACTCCCACTTTAGCGGAATAATCGAATTTAACTCTTAGAAGTCCCCTTACCCTTTTCTAAGGGTAATAATCGTAAGTATAATTTATGAAGTGCCTTCTGTGTATGTGGCAGCATATACTACTTTTGATTCTCCCTGCAAACCTGGTAGGAAAATATTATTCCCTTTATGAAGATGAAACTGAGGCTCAGCAAGATTAAGCGGTTTGCCTAAGACCTCATAGCCACTAAGTAGAAGACATTGGGTTCAAGATTCAATCTATGAACCCAACATTTTTAATACTATATACCATTCTCTTTTTGTATTAATTTCCTATTGCTGCTGTAACAAATTTCCACAAACTTAGTGGCTTAAGACAACAGAAATGTATTCTCTTCCAGTTCTGGAGGCTGACGTCTAAAATAGATCCATAGGGCTGTGTTCCTTGTGGAGGCTCCAGGGGAGCAGGGGTTTTCTTGCTCTTTCCAGCTTCCAGGGGCTGCTTCCGTCCTTTGGCTCTTGGCCTCCTTCCTCTACCTTCCAAACCAGCACCATAGTGTCTCTGAATATCCTTCTTCTGTCTCCTTTCACCCTCTTGCCTCCCTTTTATAAGGACCCTTGTGATCACATTTAAGGTCCACCTAGATAACCCAGGATAATCTGCCCATCTCAAGATTCTTAATCACATCTGCAAAGCCCTTTAACCATTACAGGTAACAATCACAGGCTTCAGGGATCAGAACATGGATATCTCTGAGAGGTCCTTACTTAGCCTACCACACCTTTCCATATAGATTCTCAAAATTTTAGCTGAGCCTAATAAGGGAGTTCATTACCATTAGGGTCCGGTTTAGTAGCAAGTGCTTCCTTTAAGTGAAAAGGTGAAAGTTGTCCACTTAATAAGGAAAGAAAAACATTGTATGTTGAAGTTGCTAAGACCTAAGGTAAGAAGGAATCTTCTATCGATGAAATTGTGAAGAAGGAAAAATAAATTTGTGCTAGTTTTGCTGTCACACTTCAAACTGCAAAAGTTACAACCACAGTGCATGCTAAGTGCTTAGCTAAGAGGGGAAAGGCATTAAATTTGTGGGCGGAAGAGGTGAACAGAAATGTGTTCTAATTGACAGCTGTCAGGTTTGGTACTATCTGAGGTTTTGGGTATCGGCTAATGTCTTGGAACATGTCCCCCAAAGATAAGTGGGTGACTACTGTATATTCAAAATAAGCATTTATATACTGGGGAGTAAATCTCCCATGTTATTTGTGTTTTATTTGTCCCACAAATAAAGTAAACAAAGTAGAATTTTAGGCAAGATTCATTTCTAGAGGCAGAGATATTTTATTATAATAAAGAAGGTTGCTCTACCATAAAATATAGCAATTTAAATTTTTATAATCCTAATAACCTCAAAATATATAAAATAAAAGATGGACAACATTATAAAAAGAAATAGACAAATGTACAATAAATAAAATATTTTAACACAACTCATTATCTAGTAAGACAAGTACTCCCCCCAAAATCAGTAAAGTATCTAGAAGATTTGAATAAATATTAACAGATTGGATTCACTGACCTTGTTACAAGAAAGAATTATACATGATGATAGGAGAGAGGAAGCCACAGCACAGGCACTTACTGATTAACTAAATTTTGAAGCTGTGAAATGCACCTTATCCTTTAGTGAAAGATGATATAAATAGCTTAGTTGCCTTCAAACTGGCAGAGACTTTTTGAATGGATGGATGCTGATTTTTTAAAAAGGAGCCCATTTCTGAGGCATCTTTTAAAGCAGGGGTCCTCAACCCCTGGGCCATAGACTGATACTGTCCAGTGGCCTGTTAGGAAATGGGCAGAACAGTAGGAGGTGAGCAGCCAAGCATTACTGCCTGAGCTCCACCTCCTGTCAGATTAGTGGCAGCATTAGATTCTCATAGGAGCAGAAACCCTATTGTGAACTGTGCATATGAGGGATCTAGGTTGCATGCTCCCTATGAGAATCTAATGACTGATGATCTGAGTGGAACAGTTCCATCTCAAAACCATTTCCCTGCACCCTCCATTCACGGAAAAATTGTCTTCCACAAAACCAGTCCCAGGTGCTAAAAAGGGACTACTGTTGTAAAGGAATAAGTCCCTTTGCTATTATTATTTTTATTAAGATGGAATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGTCTTGGCTCACTGCAACATCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGTGCACAGGCATGTGTACAGGCAAGTGCAATCATGCTCTGCTAACTTTTTGTATTTTGGGAGAGGCAGTGTTTCACCATGTTGGCCAGCCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCTCTGAAAGTGCTGAAATTACAGGCATGAGCCACCACTCCTGCACCCCTTGGCTATTATTGAAGTGTTCTTTTTCTTTTTTGATCACATCTATGAAGTATATTGGAGAGAAAGAGAAGGTAGAATGGGAATTTCAACAGGGTCACGGTGGCTCACTCCTGTAATCCCAACACTTTGGGAGGCCAAAGTGGGTAGATGACCTGAGGTCAGGAGTCGAGACCAGCCTGGCCAACATGGTAAAACCCCATCTCTACTAAAAATACGAAAATTAGCCAGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTCAGGAAGCTGAGGTAAGGACAATTGCTTGAACCCAAGAGGCGGAGGTTGCAGTGAGCCAAGATAGCGCCACTGCACTCCAGCCTGGGTGATGGAGCCAGTCTCCGTCTCAAAAAAGAAAAAAAAAAGTATGGTAATTTCTCCATTAACTTTGATGCTTCTATGGTCTTGATCTCCAG
Seq C2 exon
GTCAATGCAATGCCCCAGAATGGCTTCCATTTGCCAGGCCTACCAACCTAACTGATGAATTTGAGTTTCCCATTGGGACATATCTGAACTATGAATGCCGCCCTGGTTATTCCGGAAGACCGTTTTCTATCATCTGCCTAAAAAACTCAGTCTGGACTGGTGCTAAGGACAGGTGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203710-CR1:NM_000651:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)