RnoINT0041743 @ rn6
Intron Retention
Gene
ENSRNOG00000008193 | Cr1l
Description
complement C3b/C4b receptor 1 like [Source:RGD Symbol;Acc:2399]
Coordinates
chr13:113868579-113872097:-
Coord C1 exon
chr13:113871737-113872097
Coord A exon
chr13:113868759-113871736
Coord C2 exon
chr13:113868579-113868758
Length
2978 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGCTGCGTCTCGTTCTCCAGGCC
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGTGCTTACAAATGGAAAACTTCCAACAGCTGACTTACTATGGATTGATCCAGTGCTTGCGTTGGTGAATCAATCTCCCGAGGAAAATTCCACAGAAATTCCAGGAGCTTGGAGTAAACAAGACCCCGCCCAGCCCAGGAGGAAGCTGTAGTTCGAGCTTCATTCCGGAACCCAGCGCCATTTCCCGTACTCTGGGTGGGGCCGCCTCCTCCACCGCTTTGCCGTGAGACTGGGCTTGAGACCGCTGTGAGGGGAATGGAGGCTTCTTCGCCTCTGGACCCCGTGGGGCGCCTTGTAGCCTTCTGCCGCGGAGGAGTGCATCTGGCCGTCCTGCTGCTGTTCTTGTCGCCATCTACTTTGG
Seq A exon
GTGAGCTGCGGGGAGGCTCCGGGAGGCGCGGATGCGGGGCTCAGCGTTGACTCCAATGCTGGTCTGGGGTCACAGTGGCAGCGCAGCGAGCCTTTCCCAGGGTGAGCGTGCAGCGCGCTCAACTCAAATCGTGGGTTGTACCCAGCCAGCAGAAAGGCTTGGTCACCCAGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACAGTGTCTCGTCTGTGCTGAGTGTAGAGCCAGTTGTAGTGAGAGAAATGTTGCAGGGAGCAGGGGGTTGTGTAAATATGAGAGATGCAATTTCTAATCCTAGAATTTGGTTGTGAGGAAAGTTAATATGTTTCTGTGTTTCCTTATCTGTGAAATGTAGTTTCGTGGTATTGCTATTTAATAGGTGCTGTCAAGTGTCTAACCCAATTCCTACTCCTTAATTTATTTCTACCTTGGAGACATTACCTATGCATTTGCCCAGAAGGTCTAGACAAACAGGCCGGGGGATACAGCTTTCACTTGACAACCGTTTGTCTTGGGACTGTGTGTATTATCTCCCATCCCAAATCCTCACCAACTCCCTGGAATTCCCACTTTAAGGAAGCTTCTTCCACTTCCACTCCAGGGTACGATGTGGAAAGCTAGGAAGCCTCAAGGTGCAAAGAAATATTTGCAAGTGGAAAGGACTGTAGAACTTACACATTAAATCTTAGTGGTGTTTGAGAGCAAAATGGAATGCCCGTTTTACCCACCATGGAAGTTGTAATTTCCCTTCTTCAAGCAGAACTTTCTTAGAGAAATAGTTCCTTGAAGTCTTTTGCATTGTTTATTTTTTATTGTATGCTTTTCATTTTAACTGATAAGATTGCTTATGCAAAATCTTAGCAAAATGTCTTCCTGAAGAGTAATGTAGAGTGGAGCAGGCTGACAGCTCTTACTCTAGCAAAGTCATGGAACTGGTCATTAGTTCACAGCGCCGAGGAGTCAGGATGAATCAATCAGTGCCCCAGACGGAGCATTTAAAAGTAGGTGATGTCATCCAGGACAAAACCACAGTAAGATAACAATATACATGCATGGGAATAGTTAAAAGTTAGGCTCAATTATTAGCAATTAAGTAAAGTGATTCCATTTGTCACGTGCTGTTCACTGGCAGGTAAAACAGTTTGAAGCTATTGGAAAGCAGCTCAGCAGTGTCTCAGAACAAATCCTATCATCCAACCAGGCGTTTTACTTCTAGGTTTTTACTAAAGAAAAACAAAATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGGGTGAGTGAGTGAGTGCGTGCATGTGTGTGTGTGTGAGCATGGGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGTGCGCGTGTGTGTGTGTGTGAGTGTATAGGGGCTGGGAGAAGTGGAGGGAGGGGGAAACTGGTCAAGGTGTAAAATAAATAAACTAATGAATTAAACCTGTGACCAACAGAGACATTTTAGTTTTTATAGCTGTGTGGTGGCTTGTGTTTTGTTTCTCTCAGATTTTATTTATTTTTATTTTACATGTGTTAGTGTTTGCCTGCATGTATATCTGTGCGTCATATGCATACAGTTCCTACAGAGGCCAGAAAAAGGCATCAGATCTTCTGAGACTGAAGTCACAACAGGTTGTGAGCATGTGGGTGCTAGACATAAAGCCTGGGTCTTCTGGAGACCAGAACGTGCTCTTTAACTGCTGAACCACCTCTTCGGCTCCTTCGTAGCTGAATTATTGGTAATTGCCGATATGTGGAAATAATCAAAATGTCTTTCAGTTAAATTATGGCATACCTATCAAACCATATTTCTCAGCAGTGAAATACATGCAACCTAGGTGATCTTCAAGTAACTGTGCTTTGTAAAGCTAGACCAGAGAGAAAACAAAGACTGACATTTGTATGATAATCGTTTGGCAAAAACAGGTTGCTTGGTGAAGTGTGGCAGCCAACCCATAATTTCAGCCTCTGAAGGTATAGACTGAGGATCCTCAGGTTGAGCTGGTTAGCAGGATTAGCCATATCAGCAAGTTCTGGGTTTCACTGAGAGACTCTGCTTCAATGAGAAACCTAGAGTGATAAAGGATAATTTCCAACATCACCTTCAGGCTTCCATTTGTACTCACAAACATGCATGTGCAAACATGCAAACACACACATGAAAAACCATGCATATATGCATTCACACCAAGCACATGTACACACACACACACACACACACACACACACTCACACTCACATTGTCCAATTGATATATCGAGTATTAAAAATCGTATTCTACTCAGTTTGGTTTCAGAAATAAGATGAACATGAAATAAGATTTTATGTGAAAATTGAGGATATTATGATAAAATTTAACCTTTCATGAAATATAACAATTTAAATTTGGATGTTCTATGGGTATATAAAATAAAAGATGGGTATGATGAACAGAAATAGACAACTATAAAATAAATTGCAATATTTAAATATGACATTTTTAGCATCTAGCAGAAGTAAAAGTATTAGAAGGAAAAGAAGTCATAACAAAAATGTATTATTTCCAAAGTTAAATTAAAATGATTTTTTTTCTAACAGATAATTATTGGATAGAAATTATTTGACTCTATCTGCCACTTAAGTTAATACTGCCAAGCCTTAAAGGACAATAAACTGAGTCTGGAAGTTCAATCAAAACATGTATTGGAAAATACATTAACAAAATGAAATACAGTTTTATTTTTTGAATGTTATTGTTTTTCCCCCCTTGGCCATAGTACTGACCCATTCTTGAATGCTAGAGAGGAGGATCATGGGCCCTCATAGTTAGCTAAGGAACTGGGAGTGATGAGGGGTGTCCTCCTCTCCAGTGTAATATTGCTGCGTCTCGTTCTCCAG
Seq C2 exon
GCCAGTGCCCAGCCCCACCACTGTTTCCTTATGCCAAACCTATAAATCCAACTGATGAATCCACGTTTCCCGTTGGAACATCTTTGAAGTATGAATGTCGTCCAGGATATATCAAGAGGCAGTTCTCTATCACCTGCGAAGTAAACTCAGTGTGGACAAGTCCTCAAGACGTGTGTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008193:ENSRNOT00000010799:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]