HsaINT0041166 @ hg38
Intron Retention
Gene
ENSG00000117322 | CR2
Description
complement C3d receptor 2 [Source:HGNC Symbol;Acc:HGNC:2336]
Coordinates
chr1:207474824-207476419:+
Coord C1 exon
chr1:207474824-207475216
Coord A exon
chr1:207475217-207476233
Coord C2 exon
chr1:207476234-207476419
Length
1017 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTTTCTTATTGGTGTCTAAGCCT
3' ss Score
2.72
Exon sequences
Seq C1 exon
TTATTCACTGTCACCCTCCACCAGTGATTGTCAATGGGAAGCACACAGGCATGATGGCAGAAAACTTTCTATATGGAAATGAAGTCTCTTATGAATGTGACCAAGGATTCTATCTCCTGGGAGAGAAAAAATTGCAGTGCAGAAGTGATTCTAAAGGACATGGATCTTGGAGCGGGCCTTCCCCACAGTGCTTACGATCTCCTCCTGTGACTCGCTGCCCTAATCCAGAAGTCAAACATGGGTACAAGCTCAATAAAACACATTCTGCATATTCCCACAATGACATAGTGTATGTTGACTGCAATCCTGGCTTCATCATGAATGGTAGTCGCGTGATTAGGTGTCATACTGATAACACATGGGTGCCAGGTGTGCCAACTTGTATCAAAAAAG
Seq A exon
GTAAGATACTTGGAAGGGATAAGTTATGGGATGTTGTACAGAATAAAGAAAAGAGGTTTTGAATCTGCACTTGACATTCTGCCTAAAGAAAAGCATCTAAGAGCTAAGGCAGTTATATTGTTTTACAAGATATTTGCCTTTTCCTATCTTCTCACTTGATTGTTTGTTTTCTCTTTCCTTTCTCAGTATATTGAGCAATAAATAGTACATGAAAGGATAATGGCTAACTTCCAAATTGATAGCATCTCCAAAAATTGTTATTGTTATGACTTTAGTGTAAGAAAAATGCACATACATTTTTGGCAAATGTTTGGCAGTAATATTGCTAATTATTTGATATTTAAGGCTATGTTGCCAGCCAGAAAGAGAACTTTGGGTGTTCTGGAGAATTAATTGGCCCTCCAACCCATTGAATTGTCTTTCTTGTAATTGTAGTTATCATTTGGCAGCCTTATTCCTGTCCATGACTATCTACAGCAGAGGCTGTTTGGCAACGGTTGTCTTTGACCAGCACAGTAATCTTAAGTGAAACCCATCTTCAGTTTAAGATAAATAGTGAGCTTGCGAGCCACAAGACCCCCTTTGCTTCCCAGCAAGGCACCAGTAACTTGAGCTGAGCAGTGGCTGCCACTTTTAGAAGGACAGGGGCTCTCTGACTTGTCGTATCTGGTGGCTTCACTTCCTAGCTCTCGTAGACATTTGAAGGTGTAACCATGTCTGCTATTTAAAGGGAAAGGAAAAGAAAACTGTTGGCTGATGGATTACCATTGTGAACTGTATCCATTAATGTTTCATTATCTTATTTTTTAACACTTTTCTTCAAATCATATTGGCTATCAGTAGGAAATGCAGATCTCCATCCAGTGTTGCTGGTCTGGGTGGAATGAATGAATGTTTTTGGATACCAGTTAGTTGGCTTGTTGCTTCTGGCCTTCCTGTATCGCTATCACCCAGAGATAGTGCAGGCTATGTGTTCCTCTGTGCTGAGTTAAAGACCCTTTCTTATTGGTGTCTAAG
Seq C2 exon
CCTTCATAGGGTGTCCACCTCCGCCTAAGACCCCTAACGGGAACCATACTGGTGGAAACATAGCTCGATTTTCTCCTGGAATGTCAATCCTGTACAGCTGTGACCAAGGCTACCTGCTGGTGGGAGAGGCACTCCTTCTTTGCACACATGAGGGAACCTGGAGCCAACCTGCCCCTCATTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117322:ENST00000367058:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=46.2),PF0008415=Sushi=WD(100=42.4)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATCTCCTCCTGTGACTCG
R:
TGTGCAAAGAAGGAGTGCCTC
Band lengths:
346-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development