RnoINT0041756 @ rn6
Intron Retention
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113905004-113906371:-
Coord C1 exon
chr13:113905991-113906371
Coord A exon
chr13:113905190-113905990
Coord C2 exon
chr13:113905004-113905189
Length
801 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTTTCTTGTTGATATCCAAGCTT
3' ss Score
1.45
Exon sequences
Seq C1 exon
TCATTCTCTGTCCACCTCCACCAACAATTGCAAATGGTAGTCACACTGGCATGATGGCAGAGCACTTCCTGTATGGAAATGAAGTTTCTTATGAATGTGATAAAGGGTTCTATCTTTTGGGAGAGAAAAGTTTGCAGTGCAAAGGTCATGGATCTTGGAGTGGACCTCCACCACAGTGCTTACAATCTTCTCCTTTAACTCATTGCCCTGATCCAGAAGTCAAATATGGATACAAACTCAATAAAACTCATTCTGCATATTCTCATAATGATATAATACATGTTGTCTGCAATCAAGGCTTCATCATGAATGGCAGTCACTTGATAAGGTGTCATACTAATAACACATGGTTACCAGGTGTACCAACTTGTATCAGAACTG
Seq A exon
GTAAGCTATCTTTGTAATAAAGAGTGAGATGTTTTACAAAATAAAAAGACTTTTGAGATTGCCCTCTACTTAAAAGTAAAGCATCTAAAAGGTAAAGCAGTTAGTGTTTTTATAAGATTGTTTGCCTTTTCCTGTCTTCTCACTTGACGTTTTCTCTTTCCTTTCTATAAAGCAAGAGTACCTGAAATGATGATTAACATATAGATTAACCTCTAATTTATTCATTCTCATGACTCTAGAATTGGGAAAGTGGGCAAACTTTCTGGCAAATACTTAAAAATAATGTTCTTTGAAGTTTTGATATTTAAGGCTATTGTGTTACCCAGAAAGAGAACGTTGCATGTAACGAAGAATGAAGCTGACCTTCAAACCCACTAAGTTGTCTCATAATTTTAATTGTTATTGGACAGCTTGTTCCTGAGAGTGAGGTGCAGCCTATTAAGCTCCACAGAGGTGTGGTTCCTCTTACTTGTTCCTGGATATTTGTGTGTGCCGTGCTTAGATTATAGCCCATTTTCTATGTAGAAGGAAGATAGTAGATTAATTCGTTGAAAACACTCCTACACTTTGGGACCAACCAAGGGAAGATCCTAGAATACTATGGGCGAATAAACTATAATACTTTTGACTCTTTTCTTTTAATCATATATGGTGTAAAGAGGAAAAGCACACATTTGTCGAAACTTGAGAATGAACTAATTGGCTTATTTCTCATTGCTTTCCTGTGTTACTGTTTTCCAGAGATTGTGTTGCCTTGTGTTACTGTGTCCAATTAAAAGTCTTTTCTTGTTGATATCCAAG
Seq C2 exon
CTTCTTTAGGGTGTCAGTCTCCACCCACAATCCCCAATGGGAATCATACTGGTGGGACTATAGCTCGATTTTCCCCTGGAATGTCAGTCATGTACAGTTGTTACCAAGGCTACCTTATGGCTGGAGAGGCACGTCTTATTTGTACTCATGAGGGTACCTGGAGCCATCCTGCCCCTTATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164:ENSRNOT00000010910:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=44.5),PF0008415=Sushi=WD(100=43.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCACCACAGTGCTTACA
R:
CCAGCCATAAGGTAGCCTTGG
Band lengths:
342-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]